Locus 2761

Sequence ID 2R_DroMel_CAF1
Location 9,677,731 – 9,677,851
Length 120
Max. P 0.500000
window4573

overview

Window 3

Location 9,677,731 – 9,677,851
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -43.22
Consensus MFE -26.50
Energy contribution -27.42
Covariance contribution 0.92
Combinations/Pair 1.33
Mean z-score -1.53
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9677731 120 + 20766785
AUUUCAUGUGGCACCUGGCCGACGACAUUUGGCCAGAAUCGGAGCGAGUGUCAUUUUGCUACAAGGAACGAUAUAGCCUUCAGCAGGAGAAGAACGAUCCAGACAAGCCCAAUUGCCACG
.......((((((.((((((((......))))))))....((.((...((((....((((..((((..........)))).))))(((.........))).)))).))))...)))))). ( -42.30)
>DroVir_CAF1 206 120 + 1
ACUUUAUGAGCCACCUGGCUGACGAGGUGUGGCCCGCCUCGGAGCGCGUAUCCUUCUGUUAUAUGGAGCGGAAGAGCUUGCAGCAGGAGAAGAACGAUCCGAAUGCGCCCAACUGUCAUG
........((((....))))(((((((((.....))))))((.((((((.((((((((((......)))))))).((.....)).(((.........)))))))))))))....)))... ( -42.80)
>DroPse_CAF1 188 120 + 1
ACUUUAUGUGGCAUCUGGCGGACGACAUCUGGCCGGAAUCGGAGCGUGUGUCCUUCUGCUACAUGGAGCGCAAGAGCCUACAGCAGGAGAAAAACAAUCCGGACCAGCCCAACUGCCAUG
.......(((((((((((((((.....))).)))))).(((((...(((...((((((((....((..(....)..))...))))))))....))).)))))...........)))))). ( -44.50)
>DroGri_CAF1 246 120 + 1
AUUUCAUGACGCAGCUUGCGGCAGAGUUGUGGCCGACGGCGGAGCGUGUCUCCUUCUGCUACAUGGAGCGGAAGAGUUUGCAGCAGGAGAAGAACGAUCCAGCGGCGCCCAAUUGCCAUG
..........((.....))((((..((((.(((.(.(.(((((.(((.((((((.((((.....((..(....)..)).)))).))))))...))).))).)).)))))))))))))... ( -44.20)
>DroAna_CAF1 192 120 + 1
AUUUCAUGUGGCACUUGGCUGACGACGUUUGGCCAGAAUCGGAGCGCGUAUCCUUCUGUUAUAUGGAGCGGAAAAGCCUGCAGGAGGAGAAGAACGAUCCGGAGAAGCCGAACUGCCAUG
.......((((((.(((.....))).(((((((.....(((((...(((.(((((((((.....((.((......))))))))))))).....))).)))))....))))))))))))). ( -41.00)
>DroPer_CAF1 84 120 + 1
ACUUUAUGUGGCAUCUGGCGGACGACAUCUGGCCGGAAUCGGAGCGUGUGUCCUUCUGCUACAUGGAGCGCAAGAGCCUACAGCAGGAGAAAAACAAUCCGGACCAGCCCAACUGCCAUG
.......(((((((((((((((.....))).)))))).(((((...(((...((((((((....((..(....)..))...))))))))....))).)))))...........)))))). ( -44.50)
>consensus
ACUUCAUGUGGCACCUGGCGGACGACAUCUGGCCGGAAUCGGAGCGUGUGUCCUUCUGCUACAUGGAGCGGAAGAGCCUGCAGCAGGAGAAGAACGAUCCGGACAAGCCCAACUGCCAUG
.......((((((.(((((............)))))..(((((...(((...((((((((....((..(....)..))...))))))))....))).)))))...........)))))). (-26.50 = -27.42 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:48 2006