Locus 2758

Sequence ID 2R_DroMel_CAF1
Location 9,671,641 – 9,671,761
Length 120
Max. P 0.688069
window4568

overview

Window 8

Location 9,671,641 – 9,671,761
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.33
Mean single sequence MFE -37.92
Consensus MFE -24.65
Energy contribution -24.82
Covariance contribution 0.17
Combinations/Pair 1.31
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value 0.32
SVM RNA-class probability 0.688069
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9671641 120 + 20766785
UAUCCUGCCGGUGUACUCCGCGUUGCCAUCCGAAAUGCAGACCCGUAUAUUUGAUCCUGCGCCCGCUGGCAGCCGAAAGGUUGUUAUAGCCACCAAUAUUGCUGAAACUUCACUUACAAU
.........((((......((((....(((.((.((((......)))).)).)))...))))..((((((((((....))))))..)))))))).......................... ( -29.00)
>DroVir_CAF1 1358 120 + 1
CAUAUUGCCCGUGUACUCGGCGCUGCCCUCUGAGAUGCAGACUCGCAUCUUUGAUCCAGCGCCCGCCGGCAGUCGCAAAGUGGUGAUUGCCACAAAUAUAGCGGAAACAUCGCUCACAAU
..........(((.....(((((((...((.(((((((......))))))).))..))))))).((.(((((((((......)))))))))...........(....)...)).)))... ( -45.30)
>DroGri_CAF1 1167 120 + 1
UAUAUUGCCCGUUUACUCGGCGCUGCCAUCGGAGAUGCAGACACGCAUCUUUGAUCCGGCGCCAGCGGGUAGCCGUAAAGUGGUCAUAGCUACAAAUAUUGCGGAGACUUCGCUGACCAU
....(((((((((.....(((((((..(((((((((((......))))))))))).)))))))))))))))).......(((((((..((..........))(....).....))))))) ( -49.60)
>DroWil_CAF1 1358 120 + 1
CAUUUUGCCUGUCUAUUCUGCUCUGCCAUCCGAGAUGCAAACACGCAUCUUUGACCCUGCUCCGGCAGGCAGUCGUAAGGUGGUAAUCGCCACGAAUAUCGCUGAGACUUCACUAACCAU
.....((((((((......((.......((.(((((((......))))))).))....))...))))))))(((....(((((((.(((...))).)))))))..)))............ ( -35.50)
>DroMoj_CAF1 1167 120 + 1
CAUAUUGCCUGUGUAUUCGGCUCUUCCCUCCGAGAUGCAGACCCGAAUCUUUGAUCCAGCGCCGGCAGGCAGUCGCAAAGUGGUGAUUGCCACAAAUAUAGCUGAAACAUCGCUCACUAU
.....((((.((((((((((.(((((.......))...))).))))))..........)))).))))(((((((((......)))))))))......((((.(((........))))))) ( -33.20)
>DroAna_CAF1 1167 120 + 1
CAUAUUACCGGUGUAUUCCGCCCUGCCCUCCGAGAUGCAGACUCGUAUUUUCGACCCAGCGCCCGCGGGCAGUCGAAAGGUGGUCAUUGCCACCAAUAUUGCUGAGACUUCGUUGACCAU
....(((.(((.((.(((.((.((((((((.(((((((......))))))).))....((....))))))))......((((((....))))))......)).))))).))).))).... ( -34.90)
>consensus
CAUAUUGCCCGUGUACUCGGCGCUGCCAUCCGAGAUGCAGACACGCAUCUUUGAUCCAGCGCCCGCAGGCAGUCGAAAAGUGGUCAUUGCCACAAAUAUUGCUGAAACUUCGCUCACCAU
..........(((..(((.((.(((((.((.(((((((......))))))).))....((....)).))))).......(((((....))))).......)).)))....)))....... (-24.65 = -24.82 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:43 2006