| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,669,318 – 9,669,423 |
| Length | 105 |
| Max. P | 0.663781 |
| Location | 9,669,318 – 9,669,423 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.69 |
| Mean single sequence MFE | -41.28 |
| Consensus MFE | -27.58 |
| Energy contribution | -28.25 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9669318 105 - 20766785 CGCC---GACAGUUUUCUCCUGGCUAGCGCCGCCAGGUCUGCUGGGGCGCAUAAGAUUAAUGAUGCGCUGCAGGUUCUGGACCAGGGAGUCUGGGAAUUCGGCGCCAU ((((---(((((..(((.(((((((((.(((.((((.....))))(((((((..........)))))))...))).)))).)))))))).))).....)))))).... ( -46.10) >DroPse_CAF1 3309 108 - 1 UGCCGGAGCCGAUCUUCUCUUCGCUCCCGCCUCUCGGCCGACUGGGCCGCAUUAAGUUGAUGAUGCGCUGCAGAUUCUGGACGAGGGAGUCUGGAAACUCGGCGCCGU ...(((.(((((..((((....(((((((((....)))...(((.(.(((((((......))))))).).)))...........))))))..))))..))))).))). ( -43.30) >DroSim_CAF1 3619 105 - 1 CGCC---GCCAGUUUUCUCCUGGCUAGCGCCGCCAGGUCUACUGGGGCGCAUAAGAUUAAUGAUGCGCUGCAGGUUCUGGACCAGGGAGUCUGGGAAUUCGGCGCCAU ((((---(((((..(((.(((((((((.(((.((((.....))))(((((((..........)))))))...))).)))).)))))))).)))).....))))).... ( -48.50) >DroEre_CAF1 3181 105 - 1 CGCC---GCCAAUUUUCUCCUGGCUAUCGCCGCCAGGUUUACUGGGGCGCAUAAGAUUAAUGAUGCGCUGCAGGUUCUCGACCAGGGAGUCCGGAAAUUCGGCGCCAU .(.(---((((((((((.((((((.......)))))).....((.(((((((..........))))))).))(((((((.....))))).))))))))).)))).).. ( -41.70) >DroYak_CAF1 3191 105 - 1 CGCC---GCCAAUUUUAUCCUGGCUAGCGCCGCCGGGUCUACUGGGGCGCAUAAGAUUAAUGAUGCGCUGCAGGUUUUGGACCAAGGAGUCCGGGAAUUCGGCGCCAU .(.(---((((((....((((((...((.((....(((((((((.(((((((..........))))))).)))....))))))..)).))))))))))).)))).).. ( -41.00) >DroMoj_CAF1 3511 105 - 1 CGUC---GUCAGCCGUCAUUUUUGCAUCGCAUUCAGGUCUACUGGGUCGCAUUAAAUUAAUGAUGCGUUGCAAGUUUUGCACCAGAGAAUCGGGAAACUCGGCACCAU ....---....((((....................(((((.((((..(((((((......))))))).((((.....)))))))))).)))((....))))))..... ( -27.10) >consensus CGCC___GCCAAUUUUCUCCUGGCUAGCGCCGCCAGGUCUACUGGGGCGCAUAAGAUUAAUGAUGCGCUGCAGGUUCUGGACCAGGGAGUCUGGAAAUUCGGCGCCAU ((((..............((((((.......))))))....(((.(((((((..........))))))).))).((((((((......))))))))....)))).... (-27.58 = -28.25 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006