Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,662,116 – 9,662,207 |
Length | 91 |
Max. P | 0.713941 |
Location | 9,662,116 – 9,662,207 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.25 |
Mean single sequence MFE | -14.48 |
Consensus MFE | -9.30 |
Energy contribution | -9.42 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.55 |
Structure conservation index | 0.64 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9662116 91 - 20766785 CUUUUUCCAUUCCAUUCCCUUUUUUUUUGGGGAA--AUUCAACAUCCUGGUAAAGGACACCGCAAAUCCUUCACACAAAUCCCCUGCACAAAU ..............((((((........))))))--...........((((.(((((.........))))).)).))................ ( -12.70) >DroSec_CAF1 60718 93 - 1 CUUUUUCCAUUCCAUUCCCUUUUUUUUUGAGGGAAUAUUCAACAUCCUGGUAAAGGACACCGCAAAUUCUUCACACAAAUCCCCUGCACAAAU .............((((((((.......))))))))........((((.....))))....(((....................)))...... ( -14.45) >DroYak_CAF1 73976 81 - 1 CUUU------UCCAUUCCCUUU-----CGGGGAA-AAUUCAACAUCCUAGUAAAGGACACCGCAAAUCCUGCGCACAAAUCCCCUGCACAAAU ....------............-----.(((((.-.........((((.....))))...((((.....))))......)))))......... ( -16.30) >consensus CUUUUUCCAUUCCAUUCCCUUUUUUUUUGGGGAA__AUUCAACAUCCUGGUAAAGGACACCGCAAAUCCUUCACACAAAUCCCCUGCACAAAU ..............((((((........))))))..........((((.....))))....(((....................)))...... ( -9.30 = -9.42 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006