Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,639,223 – 9,639,317 |
Length | 94 |
Max. P | 0.845389 |
Location | 9,639,223 – 9,639,317 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 68.75 |
Mean single sequence MFE | -17.80 |
Consensus MFE | -10.30 |
Energy contribution | -10.75 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.50 |
Mean z-score | -1.49 |
Structure conservation index | 0.58 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9639223 94 + 20766785 GGAGUUAACUAAGCGAUCGUUGA-ACGCUCCAAGUUAAGAAAAAAAAAAAACAAAGAAAAAA--UGUAGCUUAAGUAGCUGCUCGG---UUGACAUCGGC .(((((((((.((((.((...))-.)))).................................--.((((((.....))))))..))---))))).))... ( -18.90) >DroSec_CAF1 37997 91 + 1 GGAGUUAACUAAGCGAUCGUUGA-ACGCUCCGAUUCAUAAAAAAAAAAAAGGAA---AAAAA--AGCAGCUUAAGUAGCUGCUCGG---UUGACAUCAGC .(((((((((..(((.((...))-.)))(((...................))).---.....--(((((((.....))))))).))---))))).))... ( -21.81) >DroSim_CAF1 59185 84 + 1 GGAGUUAACUAAGCGAUCGUUGA-ACGCUCCGAUUCAUAAAAAAAAA----------AAAAA--AGUAGCUUAAGUAGCUGCUCGG---UUGACAUCAAC .(((((((((.((((.((...))-.))))..................----------.....--(((((((.....))))))).))---))))).))... ( -19.70) >DroEre_CAF1 38077 73 + 1 ---------UAAGCGAUCGUUGAAACGAUUCGAGUAAAC---AAA-----GA-----AAAAA--AGUAGCUUAAGUAGCUGCUCUG---UUGACAUCAGC ---------((..(((((((....)))).)))..))...---...-----..-----.....--(((((((.....)))))))..(---(((....)))) ( -15.90) >DroYak_CAF1 47711 83 + 1 GGAGUUAACUAAGCGAUCGUUGA-AUGCUCCGAGUGAAU---AAA-----GC-----AAAAAAUAGUAGCAUAAGUAGCUGUUUUG---UUGACAUCAGC (((((......(((....)))..-..)))))((((.(((---(((-----((-----(.......((.((....)).)))))))))---)).)).))... ( -18.11) >DroAna_CAF1 35081 78 + 1 GGAAUUAACUAAGCGAUCGCUUU-AAGCUUCUUUUCAAC-------------------AGAA--ACUGGCUCAAGUGGCUACAAAAGACGAGAUGUCAGC ...........(((...(((((.-.((((...((((...-------------------.)))--)..)))).))))))))......(((.....)))... ( -12.40) >consensus GGAGUUAACUAAGCGAUCGUUGA_ACGCUCCGAGUCAAA___AAA_____G______AAAAA__AGUAGCUUAAGUAGCUGCUCGG___UUGACAUCAGC (((((......(((....))).....)))))..................................((((((.....)))))).................. (-10.30 = -10.75 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:39 2006