Locus 2753

Sequence ID 2R_DroMel_CAF1
Location 9,636,687 – 9,636,794
Length 107
Max. P 0.698366
window4563

overview

Window 3

Location 9,636,687 – 9,636,794
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 92.69
Mean single sequence MFE -29.92
Consensus MFE -23.12
Energy contribution -24.96
Covariance contribution 1.84
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.77
SVM decision value 0.35
SVM RNA-class probability 0.698366
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9636687 107 - 20766785
UGUGCAUAAUUAGAAGUGGUUACAUGUGGUCGAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA
.(((((.......((.(((((...(((((((.....))))))).))))).))...)))))..........((((((.....))))))..((((....))))...... ( -32.10)
>DroSec_CAF1 35507 102 - 1
UGUGCAUAAUUAGAAGUGGUUACAUGUGGUCCAUG-GAUCGCAGAAUCAGUUAGUUGCGUCGUUUGCUUGUCCAGCAAUCA----GAAAACUGGCAACAGUCAAUCA
.(((((.......((.(((((...(((((((....-))))))).))))).))...)))).)(.(((((.....))))).).----((..((((....))))...)). ( -27.40)
>DroSim_CAF1 56685 107 - 1
UGUGCAUAAUUAGAAGUGGUUACAUGUGGUCCAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA
(((((..........(((((((((((.....))))))))))).....(((((....(((.....)))...((((((.....)))))).))))))).)))........ ( -33.80)
>DroEre_CAF1 35550 104 - 1
UGUGCAUAAUUAGAAGUGGUUACAA---GUCCAUGUGAUCGCAGAAUCAGUUAGCUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGCGAACUGACAACAGUCAAUCA
...(((.........(((((((((.---.....))))))))).((..(((....)))..))...)))(((.(((((.....))))))))..((((....)))).... ( -27.70)
>DroYak_CAF1 45143 104 - 1
UGUGCAUAAUUAGAAGUGGCUACAA---UUCCAUGUGAUCGCAGAAUCAGUUAGCUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA
...(((......((.(..((((..(---(((..(((....)))))))....))))..).))...)))...((((((.....))))))..((((....))))...... ( -28.60)
>consensus
UGUGCAUAAUUAGAAGUGGUUACAUGUGGUCCAUGUGAUCGCAGAAUCAGUUAGUUGCAUCGUUUGCUUGUCCAGCAAUCAGCUGGAAAACUGGCAACAGUCAAUCA
(((((..........((((((((((.......)))))))))).....(((((....(((.....)))...((((((.....)))))).))))))).)))........ (-23.12 = -24.96 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:38 2006