Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,629,522 – 9,629,632 |
Length | 110 |
Max. P | 0.896295 |
Location | 9,629,522 – 9,629,632 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -27.24 |
Consensus MFE | -19.48 |
Energy contribution | -21.84 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.13 |
Mean z-score | -2.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9629522 110 - 20766785 AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUAUAUGUGAUUUUAGUUGGUGGCUAGUGGGAAAUGAACACCUGCAAAAGUCGCGUCAAUUGAAUUACAUU ((((......)))).........((((((....))))))....(((((((((.(((((((((((.(..((.........))..)...))))))..)))))))))))))). ( -28.60) >DroSec_CAF1 28478 110 - 1 AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUAGUUGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU (((.((((.((............((((((....))))))......(((((((((((.((((..((........))..)))).))))))))))))).)))).)))...... ( -34.10) >DroSim_CAF1 49529 110 - 1 NNNNNNNNNNNNNNNNNNNAAAAAAAGCCGAUGGGCGUUAUAUAUGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU ..........................(((....))).......(((((((((((((.((((..((........))..)))).)))))))))))))............... ( -27.70) >DroEre_CAF1 28562 108 - 1 AUUGGGUUUACAAUUUGUUAAAAAGCGCGGAUGGGCGUCAUA--GGCUAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGACAAGUCAAUUGAAUUAUUUU ..........(((((.........((((......))))....--((((.(((((((.((((..((........))..)))).)))))))...)))))))))......... ( -22.60) >DroYak_CAF1 37968 100 - 1 AUUGCACUUACAAUUUGUUAAAAAGCGCUGAUGGGCGUAA---------UGUUAGUUGGUGUGUAGUGGGAAAUGAACACCUGCUAAAGACACGUCAAUCGAAUUACUU- ...((.(((((.....))....))).))((((.(((((..---------..(((((.(((((...((.....))..))))).)))))....))))).))))........- ( -23.20) >consensus AUUGGAUUUACAAUUUGUUAAAAAACGCCGAUGGGCGUUAUA__UGUGAUUUUAGUUGGUGGGUAGUGGGAAAUGAACACCUGCUAAAGUCACGUCAAUUGAAUUACAUU .......................((((((....))))))......(((((((((((.((((..((........))..)))).)))))))))))................. (-19.48 = -21.84 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:36 2006