| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,602,852 – 9,602,942 |
| Length | 90 |
| Max. P | 0.843647 |
| Location | 9,602,852 – 9,602,942 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 73.39 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -12.90 |
| Energy contribution | -13.73 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9602852 90 - 20766785 CUCCCUGCGAAGGGAA----GCGCUUCCAGUGGGAAGUGGGG-GGGUUUGUUGAAGCCAUUGUUAGCGAAUAUAAAGAUGCUGCCGAUAUGGAGC ((((((((........----))((((((....))))))))))-))(((((((((........)))))))))........(((.((.....))))) ( -27.20) >DroPse_CAF1 16250 75 - 1 CCCCCUCCCCAGUAGC--GAGCCCUCCUU---GA-------G-G------CU-CGCCUAUUGUUCGGAACAAUAAAGCUGCCUCCGAUAGGGAGC ....((((((((((((--((((((.....---).-------)-)------))-)).)))))).(((((.((.......))..)))))..))))). ( -30.70) >DroSec_CAF1 17907 75 - 1 CUCCCUGCGAAGGGAA----GCACUUCCUGUGGA-------G-G--------GGAGCCAUUGUUAGCGGCUAUAAAGAUGCUGCCGAUAUGGAGC ((((((.....(((((----....))))).....-------)-)--------))))((((.((..(((((.........)))))..))))))... ( -29.40) >DroSim_CAF1 39181 76 - 1 CUCCCUGCGAAGGGAA----GCGCUUCCUGUGGA-------G-GG-------GGAGCCAUUGUUAGCGGCUAUAAAGAUGCUGCCGAUAUGGAGC ((((((.((.(((((.----....))))).)).)-------)-))-------))..((((.((..(((((.........)))))..))))))... ( -30.40) >DroEre_CAF1 17999 78 - 1 CUCCCUACGGAGGGAA----ACGCUUCCUGCCGG-------GAG------CUGAAAGCAUUGUUAGCGGCUAUAAAGAUGCUGCCGAUAUAGAGC .(((((....))))).----..((((((....))-------)))------).....((..(((..(((((.........)))))..)))....)) ( -25.20) >DroYak_CAF1 27282 81 - 1 CUCCCUACGGAGGGAAGUAAGCGCUUCCUGUCGG-------G-G------CUGAAACCAUUGUUAGCGGCUAUAAAGAUGCUGCCGAUAUGGAGC ..(((..((..(((((((....)))))))..)))-------)-)------......((((.((..(((((.........)))))..))))))... ( -28.10) >consensus CUCCCUGCGAAGGGAA____GCGCUUCCUGUGGA_______G_G______CUGAAGCCAUUGUUAGCGGCUAUAAAGAUGCUGCCGAUAUGGAGC .(((((....))))).........................................((((.((..(((((.........)))))..))))))... (-12.90 = -13.73 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:28 2006