Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,594,312 – 9,594,410 |
Length | 98 |
Max. P | 0.594636 |
Location | 9,594,312 – 9,594,410 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.96 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -20.10 |
Energy contribution | -20.94 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9594312 98 - 20766785 CAUCCUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCCAAUGCACUCUGUGCAGUCCAGUUGGAAAAGCGUUUCAGGUGCUUUCCUUGCUGCCAGAUAUUU .(((........((((..(((((((-------(((((((((....))).)))).))..(((....))))))))))..)))).((.......)).....))).... ( -27.90) >DroSec_CAF1 9448 96 - 1 CAUCAUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCAAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUGCUGCCAGAUAUUU .(((........((((..(((((((-------((.((((((....))).)))--))..(((....))))))))))..))))(((..........))).))).... ( -30.40) >DroSim_CAF1 17521 96 - 1 CAUCAUUUCCUUCCUGCUGCGCUUU-------GCCAGAUGCCAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUUCUACCAGAUAUUU ..........((((((..(((((((-------.((((.((....(((.....--)))...)).)))).)))))))..))))))...................... ( -25.40) >DroEre_CAF1 9376 96 - 1 CAUCCUUUCCUUCCUGCUGCGCUGU-------GCCAGAUGCCAAUGCACUCU--GCAGUCCAGUUGGAAAAGCGUUUUACGGGCUUUUCUCGCUGCCAGAUAUUU .(((...........((((((..((-------((...........))))..)--))))).((((.((((((((.(.....).)))))))).))))...))).... ( -26.60) >DroYak_CAF1 19005 103 - 1 CAUCCUUUCCUUCCUGCUGCGCCUUGCCAAAUGCCAGAUGCCAAUGCACUCU--GCCGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUUCUCGCUGCCAGAUAUUU .(((........((((..((((....(((((((.(((((((....))).)))--).)))....))))....))))..))))(((..........))).))).... ( -27.90) >consensus CAUCCUUUCCUUCCUGCUGCGCUUU_______GCCAGAUGCCAAUGCACUCU__GCAGUCCAGUUGGAAAAGCGUUUCAGGGGCUUUCCUUGCUGCCAGAUAUUU .(((........((((..(((((((.......((..(((((....))).))...))..(((....))))))))))..))))(((..........))).))).... (-20.10 = -20.94 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:25 2006