Locus 2745

Sequence ID 2R_DroMel_CAF1
Location 9,592,617 – 9,592,724
Length 107
Max. P 0.958264
window4549

overview

Window 9

Location 9,592,617 – 9,592,724
Length 107
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -11.65
Consensus MFE -9.54
Energy contribution -9.94
Covariance contribution 0.40
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.82
SVM decision value 1.49
SVM RNA-class probability 0.958264
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9592617 107 - 20766785
CUGCCACUACAUUUCUGCAAAUUCUUGUAUACUAUAUUUCUAUUUU-UCUAUUUUUUUUUCCUCUUUUAGAACUUUUUUUUUCGUUGUAGAACUGUAGAAUGU--UUUAG
......(((((.((((((((.....((((...)))).........(-((((................)))))............)))))))).))))).....--..... ( -14.19)
>DroSec_CAF1 7737 95 - 1
CUGCCACUACAUUUCUGCAAAUUCUCGUAUACUAUAUUCCUUUUUU-UCUUUUUUUUCUGUC------------UUUUUUUCCGUUGCAGAGCUGUAGAAUGU--UUUAG
......(((((.((((((((..........((..............-............)).------------..........)))))))).))))).....--..... ( -13.77)
>DroSim_CAF1 15815 98 - 1
CUGCCACUACAUUUCUGCAAAUUCUCGUAUACUAUAUUUCUAUUUU-UCUAUUUUUUUCUUCUCU---------UUUUUUUCCGUUGCAGAACUGUAGAAUGU--UUUAG
......(((((.((((((((..........................-..................---------..........)))))))).))))).....--..... ( -13.48)
>DroEre_CAF1 7713 87 - 1
CUGCCACUACAUUUCUGCAAAUUCCCGUACACUAUAUAUUUAUUUUUUCCCUCCUUUUU--------------------UUUUG-UGUAGAACUGUAGAAUGU--UUUAG
......(((((.(((((((........................................--------------------.....-))))))).))))).....--..... ( -10.78)
>DroYak_CAF1 17253 96 - 1
CUGCCACUACAUUUCUGCAAAUUCCCGUAUACUAUAUUUUUAUUUUUUCUCUUCUUUUUUCCCCU------------UUUUUUG-U-UAGAACUGCAGAAUUUUUUUUAG
............(((((((.......(....)...................((((..........------------.......-.-.)))).))))))).......... (  -6.01)
>consensus
CUGCCACUACAUUUCUGCAAAUUCUCGUAUACUAUAUUUCUAUUUU_UCUAUUUUUUUUUCC_CU_________UUUUUUUUCGUUGUAGAACUGUAGAAUGU__UUUAG
......(((((.((((((((................................................................)))))))).)))))............ ( -9.54 =  -9.94 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:24 2006