Locus 2744

Sequence ID 2R_DroMel_CAF1
Location 9,592,448 – 9,592,538
Length 90
Max. P 0.607844
window4548

overview

Window 8

Location 9,592,448 – 9,592,538
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -30.42
Consensus MFE -26.11
Energy contribution -26.92
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -1.47
Structure conservation index 0.86
SVM decision value 0.15
SVM RNA-class probability 0.607844
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9592448 90 - 20766785
GUUUAGUGCACCCAGCCGUUUGUCCAAAUGCAUCUGGGUGUAAAAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCUC
((((..(((((((((.(((((....)))))...)))))))))..)))).............((((((.((((....)).)).)))))).. ( -33.40)
>DroSec_CAF1 7566 90 - 1
GUUCAGUGCACCCAGCCGUUUGUACAAAUGCAUCUGGGUGUAAAAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCCC
(((((.(((((((((.(((((....)))))...))))))))).......))))).......((((((.((((....)).)).)))))).. ( -33.60)
>DroSim_CAF1 15643 90 - 1
UCUCAGUGCACCCAGCCGUUUGUCCAAAUGCAUCUGGGUGUAAAAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCCC
..(((((((((((((.(((((....)))))...))))))))..............))))).((((((.((((....)).)).)))))).. ( -33.13)
>DroEre_CAF1 7549 86 - 1
G-U---UGCACCCAGCCGUUUGUCCAAAUGCAUCUGGGUGUAAAAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCCC
.-(---(((((((((.(((((....)))))...))))))))))..................((((((.((((....)).)).)))))).. ( -32.50)
>DroYak_CAF1 17081 89 - 1
C-UUACUGCACAUAGCCGUUUGUCCAAAUGCAUCUGGGUGUAAGAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCCC
.-..........((((((((..(.....(((((....)))))......)..))))))))..((((((.((((....)).)).)))))).. ( -30.20)
>DroMoj_CAF1 7527 81 - 1
GA--UGA----GAAGAUGUUUGUCUGAAUGCAGUCGAGUGUAA-AAAUAUGAAUGGCGAAUGGGCGGCU--GGGCGGCUGACACGCCCAC
..--...----........(((((((..(((..(((.((....-..)).)))...)))..))))))).(--(((((.......)))))). ( -19.70)
>consensus
G_U_AGUGCACCCAGCCGUUUGUCCAAAUGCAUCUGGGUGUAAAAAAUAUGAAUGGCUGAUGGGCGUUGCGCCGCCGCUGCCACGCCCCC
............((((((((..(.....(((((....)))))......)..))))))))..((((((.((((....)).)).)))))).. (-26.11 = -26.92 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:23 2006