Locus 2742

Sequence ID 2R_DroMel_CAF1
Location 9,589,339 – 9,589,430
Length 91
Max. P 0.977576
window4546

overview

Window 6

Location 9,589,339 – 9,589,430
Length 91
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 93.66
Mean single sequence MFE -24.52
Consensus MFE -20.14
Energy contribution -20.18
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -2.16
Structure conservation index 0.82
SVM decision value 1.79
SVM RNA-class probability 0.977576
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9589339 91 + 20766785
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUCGGCCAACA---------ACAAUGCGAGCAGCAGC
(((((((..(((.....(.(((.....))).)............((....))..(((((....)))))......---------....)))..))))))). ( -26.60)
>DroSec_CAF1 4517 89 + 1
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUCGGCCAACA---------ACAAUGCG--GAGCAGC
(((((...........)))))....(((((((............((....))..(((((....)))))......---------.......)--)))))). ( -25.40)
>DroSim_CAF1 12603 88 + 1
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUCGGCCAACA---------ACAAUGCG---AGCAGC
..(((((..(((.....(.(((.....))).)............((....))..(((((....)))))......---------....))).---.))))) ( -23.90)
>DroEre_CAF1 4410 88 + 1
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUCGGCCAACA---------ACAAUGCG---AGCAGC
..(((((..(((.....(.(((.....))).)............((....))..(((((....)))))......---------....))).---.))))) ( -23.90)
>DroYak_CAF1 13886 97 + 1
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUUGUCCAACAACAAGAACAACAAUGCG---AGCAGC
..(((((..(((.....(((((.....))).............((((........))))))..(((((......)))))........))).---.))))) ( -22.80)
>consensus
UUGCUGCCAGCAAAUAAGCGACUUCCUGUUCCAAUAAGAAAUACUCGAAAGACCCCGAGGCGACUCGGCCAACA_________ACAAUGCG___AGCAGC
..(((((..(((.....(.(((.....))).)............((....))..(((((....)))))...................))).....))))) (-20.14 = -20.18 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:21 2006