| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,586,480 – 9,586,591 |
| Length | 111 |
| Max. P | 0.537032 |
| Location | 9,586,480 – 9,586,591 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.57 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -16.48 |
| Energy contribution | -17.87 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9586480 111 - 20766785 CAUUAUUUAUAUAUGGAGAAACAU---UUUUAUGUCAGUGUUUCC-GUGUGUGUAGUACACACAAGUACACAAAGGAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG ...(((((.......(.(((((((---(........)))))))))-(((((((...))))))))))))(((((((((....((..(((....)))..))(....)))))))))). ( -30.80) >DroPse_CAF1 1664 109 - 1 CAGCAUC-CUAUAUACACACACAUACAGUAUAUGUCUAUGUAUAUGAUGUAUGUUGUACUCUUU--UA---UGAGAAGGAAGUUCGCCCACUGGCAAGCCGGAAGUCCUUUGUCC ..((.((-((......(((.(((((((.((((((......)))))).)))))))))).(((...--..---.))).)))).....(((....)))..)).((....))....... ( -25.60) >DroSec_CAF1 1717 110 - 1 CAUUACUUAAAUAUGGAGAAACAU---UUUUAUGUCAGUGUUUCC-AUGUGUGU-GUACACACAAGUACACAAAGGAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG ...(((((....(((((((.((((---....)))).....)))))-))(((((.-...))))))))))(((((((((....((..(((....)))..))(....)))))))))). ( -33.40) >DroSim_CAF1 9931 110 - 1 CAUUAUUUAUAUAUGGAGAAACAU---UUUUAUGUCAGUGUUUCC-AUGUGUGU-GUACACACAAGUACACAAAGGAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG ...((((((((((((((((.((((---....)))).....)))))-))))))((-(....))))))))(((((((((....((..(((....)))..))(....)))))))))). ( -31.60) >DroEre_CAF1 1738 103 - 1 CACUCUGCAUAGAUGGAGCAACAC---UUUUAUGCCAGUGUUUUC-CUGUGU-------ACACAAGUACAGA-AGGAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG ((((..(((((((.(........)---.))))))).))))(((((-((.(((-------((....)))))..-))))))).((..(((....)))..))(....).......... ( -27.30) >DroYak_CAF1 11109 103 - 1 CAUUCAUCAUAGAUGGGAAAACGU---UUUUAUGUCAGUGUUUCC-AUGUGU-------ACACAAGUACGCA-AGAAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG .......(((..(((((((.((..---..........)).)))))-))((((-------((....)))))).-.((((((.((..(((....)))..))(....)))))))))). ( -23.70) >consensus CAUUAUUUAUAUAUGGAGAAACAU___UUUUAUGUCAGUGUUUCC_AUGUGUGU_GUACACACAAGUACACAAAGGAGGAAGUUCAGCAAUUGCUAGGCCGGAAGUCUUUUGUGG .................(((((((.............)))))))...((((((.....))))))....(((((((((....((..(((....)))..))(....)))))))))). (-16.48 = -17.87 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:20 2006