Locus 2738

Sequence ID 2R_DroMel_CAF1
Location 9,583,976 – 9,584,096
Length 120
Max. P 0.790658
window4539

overview

Window 9

Location 9,583,976 – 9,584,096
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -27.28
Consensus MFE -23.84
Energy contribution -23.40
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.35
Structure conservation index 0.87
SVM decision value 0.59
SVM RNA-class probability 0.790658
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9583976 120 + 20766785
GAAUGAUUGGCACACUUUACUUACACUUACUUACUGCUCAUUUAUCGAAGGAUAAGUGACUGAGAUGAAAAGCAAAACCAAGGGCAGGACACUCUACUAAUGUCCUGCCAACAAAUCAAC
...(((((.((..................((((....(((((((((....))))))))).)))).(....))).........(((((((((.........)))))))))....))))).. ( -31.60)
>DroSim_CAF1 7456 120 + 1
GAAUGAUUGGCACACUUUACUUACACUUACUUACUGCUCAUUUAUCGAAGGAUAAGCGACUGAGAUGAAAAGCAAAACCAAGGGAAGGACACUCUACUAAUGUCCUGCCAACAAAUCAAC
...((.(((((.......................((((..((((((..((.........))..)))))).))))...........((((((.........)))))))))))))....... ( -23.40)
>DroYak_CAF1 8586 120 + 1
AAAUGAUUGGCACACUUUACUUACACUUACUUACUGCUCAUUUAUCGAAGGAUAAGAGACUGAGAUGAGAAGCAAAAACAAAGGAAGGACACUCUACUAAUGUCCUGCCAACAAAUCAAC
...((.(((((...((((.......(((.((((...((((((((((....))))))....)))).))))))).......))))..((((((.........)))))))))))))....... ( -26.84)
>consensus
GAAUGAUUGGCACACUUUACUUACACUUACUUACUGCUCAUUUAUCGAAGGAUAAGAGACUGAGAUGAAAAGCAAAACCAAGGGAAGGACACUCUACUAAUGUCCUGCCAACAAAUCAAC
...((.(((((..............(((......((((..((((((..((.........))..)))))).))))......)))..((((((.........)))))))))))))....... (-23.84 = -23.40 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:15 2006