Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,583,427 – 9,583,547 |
Length | 120 |
Max. P | 0.821837 |
Location | 9,583,427 – 9,583,547 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -57.37 |
Consensus MFE | -54.81 |
Energy contribution | -54.37 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.92 |
Structure conservation index | 0.96 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9583427 120 - 20766785 GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGUGCCGCCAACGGAAACAACGGGGCU (((((((..(((((((((((((.((((((((((..(.((((((((....))).)))))).)))))))))).)))))).....))))).))..)))))))(((...(....).....))). ( -57.80) >DroSim_CAF1 7029 120 - 1 GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGCGCCGCCAACGGAAACAACGGGGCU .((.((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).))))))...))(((.((...(....)...))))). ( -56.50) >DroYak_CAF1 8061 120 - 1 GGAAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUUGGCUCGAAUGGCGCUGCCAAUGGAAACAGCGGGGCU ....((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).))))))..(((.((((...((....)))))).))) ( -57.80) >consensus GGUAUCGGGUGGUUGAGCGCCAAUGGAGCCGCCGGCGCAGCUCUGCUGGCAGCGGCUGGAGGUGGUUUCGGUGGUGCGAUGGUCGGCUCGAAUGGCGCCGCCAACGGAAACAACGGGGCU ....((((((.(....((((((.((((((((((..(.((((((((....))).)))))).)))))))))).))))))......).)))))).....(((.((...(....)...))))). (-54.81 = -54.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:14 2006