Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,580,032 – 9,580,152 |
Length | 120 |
Max. P | 0.510955 |
Location | 9,580,032 – 9,580,152 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.83 |
Mean single sequence MFE | -41.37 |
Consensus MFE | -34.70 |
Energy contribution | -35.14 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.77 |
Structure conservation index | 0.84 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9580032 120 - 20766785 AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCACCUGCUCCACCGCUGCCACAAGCAGCACCUGUGCCGGCACAAAAUGGUAAUGGCAAUGGCAGUACAAGUGGAGCCGGAU (((.(((((.((.......)).).)))).))).........((.(((((((.(((((((...((((...))))((((..((......))..))))..)))))))....))))))).)).. ( -42.60) >DroSim_CAF1 3432 114 - 1 AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU------GGCAAUGGCAGUACAAGUGGUGCCGGAU (((.(((((.((.......)).).)))).))).........((.((.((((.(((((((((((.....))))(((((........)------)))).)))))))....)))).)).)).. ( -40.20) >DroYak_CAF1 4546 108 - 1 AGGUGCUGCAGCCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU------------GGCAGUACAAGUGGAGCCGGAA .((((((((..........)))))..)))............((.(((((((.((((((...))))))...(((((.(.((.....)------------).).))))).))))))).)).. ( -41.30) >consensus AGGUGCAGCAGUCACCUCAGCAGUCUGCCCCUCAAUCCCCGCCUGCUCCACCGCUGCCACAGGCAGCACCUGUGCCGGCACAAAAU______GGCAAUGGCAGUACAAGUGGAGCCGGAU (((.(((((.((.......)).).)))).))).........((.(((((((.(((((.....)))))...(((((.(.(...................).).))))).))))))).)).. (-34.70 = -35.14 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:09 2006