Locus 2733

Sequence ID 2R_DroMel_CAF1
Location 9,578,435 – 9,578,555
Length 120
Max. P 0.890362
window4532

overview

Window 2

Location 9,578,435 – 9,578,555
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -41.93
Consensus MFE -40.59
Energy contribution -40.70
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.01
Structure conservation index 0.97
SVM decision value 0.96
SVM RNA-class probability 0.890362
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9578435 120 - 20766785
AAGGCAACAACAAUCUGCAGCAACUGUGCACCGAUAAUCUGGUGUUGGCACCUCCGCCGCAGUUCUGCGAUUGCAAUGAUGCCAAGCACGCGCCGCAGCCGCAUCUGCCAACGAGCCAAU
..((((.((.(((((.((((.((((((((((((......)))))).(((......))))))))))))))))))...)).))))..((.((....((((......))))...)).)).... ( -42.60)
>DroSim_CAF1 1847 120 - 1
AGGGCAACAACAAUCUGCAGCAACUGUGCACCGAUAAUCUGGUGUUGGCACCUCCGCCGCAGUUCUGCGAUUGCAACGAUGCCAAGCACGCUCCGCAGCCGCAUCUGCCAACGAGCCAAU
..((((.(..(((((.((((.((((((((((((......)))))).(((......))))))))))))))))))....).))))......((((.((((......))))....)))).... ( -42.70)
>DroYak_CAF1 2970 120 - 1
AGGGCAACAACAAUCUGCAGCAGCUGUGCACCGAUAAUCUGGUGUUGGCGCCACCGCCUCAGUUCUGCGAUUGCAACGAUGCCAAGCACGCGCCGCAGCCGCAUCUGCCAACGAGCCAAU
..((((....(((((.((((.(((((.((((((......)))))).((((....)))).))))))))))))))....(((((...((.......))....)))))))))........... ( -40.50)
>consensus
AGGGCAACAACAAUCUGCAGCAACUGUGCACCGAUAAUCUGGUGUUGGCACCUCCGCCGCAGUUCUGCGAUUGCAACGAUGCCAAGCACGCGCCGCAGCCGCAUCUGCCAACGAGCCAAU
..((((....(((((.((((.((((((((((((......)))))).(((......))))))))))))))))))....(((((...((.......))....)))))))))........... (-40.59 = -40.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006