Locus 2730

Sequence ID 2R_DroMel_CAF1
Location 9,572,597 – 9,572,701
Length 104
Max. P 0.878161
window4526

overview

Window 6

Location 9,572,597 – 9,572,701
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 95.51
Mean single sequence MFE -40.57
Consensus MFE -38.80
Energy contribution -38.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.96
SVM decision value 0.90
SVM RNA-class probability 0.878161
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9572597 104 - 20766785
CGCCCACACCUCCGACGCCGACACCACCGCCGCCCACCGUUUGCUGCAUCAUCUGCGCCUGCAUCAACUGCGCCUUGGUGGCAUUGUACUCGGGCGGUGGUGGU
......................(((((((((((((...((..((.(((.....)))))..)).........(((.....))).........))))))))))))) ( -40.50)
>DroSec_CAF1 49126 104 - 1
CGCCCACACCUCCGACGCCGACACCACCGCCGCCCACCGUUUGCUGCAUCAUCUGAGCCUGCAUCAACUGCGCCUUGGUGGCAUUGUACUCGGGCGGUGGUGGU
......................(((((((((((((...((((((.((.((....))))..)))..)))...(((.....))).........))))))))))))) ( -40.30)
>DroSim_CAF1 48900 104 - 1
CACCAACACCACCUACCCCGACACCACCGCCGCCCACUGUUUGCUGCAUCAUCUGCGCCUGCAUCAACUGCGCCUUGGUGGCAUUGUACUCGGGCGGUGGUGGU
......................(((((((((((((...((.(((..(((((...((((..(......).))))..))))))))....))..))))))))))))) ( -40.90)
>consensus
CGCCCACACCUCCGACGCCGACACCACCGCCGCCCACCGUUUGCUGCAUCAUCUGCGCCUGCAUCAACUGCGCCUUGGUGGCAUUGUACUCGGGCGGUGGUGGU
......................(((((((((((((...(((((.((((...........)))).)))..))(((.....))).........))))))))))))) (-38.80 = -38.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:02 2006