Locus 2726

Sequence ID 2R_DroMel_CAF1
Location 9,553,364 – 9,553,465
Length 101
Max. P 0.858285
window4519

overview

Window 9

Location 9,553,364 – 9,553,465
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.55
Mean single sequence MFE -22.64
Consensus MFE -16.86
Energy contribution -17.74
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -2.16
Structure conservation index 0.74
SVM decision value 0.82
SVM RNA-class probability 0.858285
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9553364 101 + 20766785
-AUGUGUAGAUACUUCUCUAUAUGUCCCAUAUACCCCUUGAUUACACGAUUGAGGGGUAUCGAAAGCGCUGAAGUAAGGCAGAACAGAAACAAAAACAACAA
-.(.(((...((((((..............((((((((..(((....)))..))))))))(....)....))))))..))).)................... ( -25.00)
>DroSec_CAF1 29938 101 + 1
-AUGUGCAGAUACUUCUCAAUAUGUCCCAUAUACCCCUUGAUUACACGAUUGAGGGGUAUCGAAAGCGCUGAAGUAAAGCAGAACAGAAACAAAAACAACAA
-.(.(((...((((((..............((((((((..(((....)))..))))))))(....)....))))))..))).)................... ( -25.50)
>DroSim_CAF1 29597 101 + 1
-AUGUGUAGAUACUUCUCUAUAUGUCCCAUAUACCCCUUGAUUACACGAUUGAGGGGUAUCGAAAGCGCUGAAGUAAAGCAGAACAGAAACAACAACAACAA
-..(((((((......)))))))((.....((((((((..(((....)))..)))))))).....))(((.......)))...................... ( -24.80)
>DroEre_CAF1 32071 101 + 1
-AUAUGAAGAUACCUGCGUGUAAAACCCAUAUACUCCUUGAUUAUACGAUUGAGGGGUAUCGAAAGCGCUGAAGUAAGGCAGAACAGAAACAAAAACAACAA
-.......((((((...(((((.......))))).(((..(((....)))..)))))))))....((.((......))))...................... ( -20.30)
>DroYak_CAF1 31252 101 + 1
AAAAUUAAGAUACUUGUCUAUAGAACUCAUAUAC-CCUUGAUUAUGCGAUUGAGGGGCAUCGAAAGCGCUGAAGUAAGGCAGAACAGAAACAAAAACAACAA
.............((((((..............(-(((..(((....)))..))))((..(....).)).......)))))).................... ( -17.60)
>consensus
_AUGUGAAGAUACUUCUCUAUAUGUCCCAUAUACCCCUUGAUUACACGAUUGAGGGGUAUCGAAAGCGCUGAAGUAAGGCAGAACAGAAACAAAAACAACAA
..........((((((..............((((((((..(((....)))..))))))))(....)....)))))).......................... (-16.86 = -17.74 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:55 2006