Locus 2723

Sequence ID 2R_DroMel_CAF1
Location 9,545,124 – 9,545,228
Length 104
Max. P 0.595937
window4515

overview

Window 5

Location 9,545,124 – 9,545,228
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.70
Mean single sequence MFE -19.98
Consensus MFE -10.95
Energy contribution -11.40
Covariance contribution 0.45
Combinations/Pair 1.29
Mean z-score -1.89
Structure conservation index 0.55
SVM decision value 0.13
SVM RNA-class probability 0.595937
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9545124 104 + 20766785
GCUGCUGCCAGCCACUAAUUAAGCCGCACAAAGAAAUGCUCAGCGCAAUUACAUGGAGGCUGGCACAUCCACUAUGUACUUAUUUUAAUAUAUGUAUCUACAAA
..((.((((((((.(((..(((..(((....(....).....)))...)))..))).)))))))))).......((((..(((..........)))..)))).. ( -22.90)
>DroPse_CAF1 40721 95 + 1
GCU---GCCAGCUGCUAAUUAAGCAUCACAAAGAAAUGCUCAACGCAAUUACAUACGGGUA--UACAUCUCAUGUACACUCAUGUACAUA----CCUAUACAUA
..(---(((.(.((((.....)))).).........(((.....)))..........))))--........(((((((....))))))).----.......... ( -15.30)
>DroSec_CAF1 21802 97 + 1
GCU---GCCAGCCACUAAUUAAGCCGCACAAAGAAAUGCUCAGCGCAAUUACAUGGAGGCUGGCACAUCCACUAUGUACUUAUUUUUAUA----UAUCUACAAA
..(---(((((((.(((..(((..(((....(....).....)))...)))..))).)))))))).........((((..(((......)----))..)))).. ( -23.10)
>DroSim_CAF1 22196 97 + 1
GCU---GCCAGCCACUAAUUAAGCCGCACAAAGAAAUGCUCAGCGCAAUUACAUGGAGGCUGGCACAUCCACUAUGUACUUAUUUUUAUA----UAUCUACAAA
..(---(((((((.(((..(((..(((....(....).....)))...)))..))).)))))))).........((((..(((......)----))..)))).. ( -23.10)
>DroYak_CAF1 23037 87 + 1
GCU---GCCAGCCACUAAUUAGGCCGCACAAAGAAAUGCUCAGCGCAAUUACAUGGAGGCUGGCACAUCCACUAUAUACUUAUUUUUAUA--------------
..(---(((((((.(((..(((..(((....(....).....)))...)))..))).)))))))).........................-------------- ( -20.20)
>DroPer_CAF1 39078 95 + 1
GCU---GCCAGCUGCUAAUUAAGCAUCACAAAGAAAUGCUCAACGCAAUUACAUACGGGUA--UACAUCUCAUGUACACUCAUGUACAUA----CCUAUACAUA
..(---(((.(.((((.....)))).).........(((.....)))..........))))--........(((((((....))))))).----.......... ( -15.30)
>consensus
GCU___GCCAGCCACUAAUUAAGCCGCACAAAGAAAUGCUCAGCGCAAUUACAUGGAGGCUGGCACAUCCACUAUAUACUUAUUUUUAUA____UAUCUACAAA
......(((((((.(((.....(.....).......(((.....)))......))).)))))))........................................ (-10.95 = -11.40 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:52 2006