Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,535,406 – 9,535,500 |
Length | 94 |
Max. P | 0.601915 |
Location | 9,535,406 – 9,535,500 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 91.03 |
Mean single sequence MFE | -14.59 |
Consensus MFE | -11.50 |
Energy contribution | -11.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.79 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9535406 94 - 20766785 CACACAGUAUCCGCAAAAAAAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAG-----CCAGCAG-UACUCAGAUACAAUUGGAACAUUCA ......(((((.((((.......)))).........--...(((((((.........))))..)-----)).....-......))))).............. ( -13.30) >DroSec_CAF1 12279 99 - 1 CACACAGUAUCCGCAAA-AAAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAGCCAAGCCAGCAGAUACUCAGAUACAAUUGGAACAUUCA .....((((((.((...-...(((....))).....--...(((((((.........))))..)))......)).))))))..................... ( -15.70) >DroSim_CAF1 11150 101 - 1 CACACAGUAUCCGCAAA-AAAGGUUGCAACCCCAAAAAAAAGGUGCUUUAAAAUAUUAAGCAAGCCAAGCCAGCAGAUACUCAGAUACAAUUGGAACAUUCA .....((((((.((...-...(((....)))..........(((((((.........))))..)))......)).))))))..................... ( -15.70) >DroEre_CAF1 14009 95 - 1 CACACAGUAUCCGCAAA--AAGGUUGCAACCCCAAAAAAAAGGUGCUUUAAAAUAUUAAGCAAG-----CCACCAGAUACACAGAUACAAUAAGAACAUUCA ......(((((......--..(((.((....((........))(((((.........))))).)-----).))).........))))).............. ( -13.93) >DroYak_CAF1 13227 93 - 1 CACACAGUAUCCGCAAA--AAGGUUGCAACCCCAAA--AAAGGUGCUUUAAAAUAUUAAGCAAG-----CCACCAGAUACCCAGAUACAAAUGAAACACUCA ......(((((......--..(((.((.(((.....--...)))((((.........))))..)-----).))).........))))).............. ( -14.33) >consensus CACACAGUAUCCGCAAA_AAAGGUUGCAACCCCAAA__AAAGGUGCUUUAAAAUAUUAAGCAAG_____CCAGCAGAUACUCAGAUACAAUUGGAACAUUCA ......(((((.((((.......))))................(((((.........))))).....................))))).............. (-11.50 = -11.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:49 2006