Locus 2720

Sequence ID 2R_DroMel_CAF1
Location 9,534,205 – 9,534,301
Length 96
Max. P 0.650687
window4511

overview

Window 1

Location 9,534,205 – 9,534,301
Length 96
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 92.90
Mean single sequence MFE -24.18
Consensus MFE -18.03
Energy contribution -18.23
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -1.96
Structure conservation index 0.75
SVM decision value 0.24
SVM RNA-class probability 0.650687
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9534205 96 + 20766785
ACCAGACUUAAUGUGUGUUACACUUACAAUGCGAUAAACCAUUUUCACCAUCAUACUCGGUAUGAGUUUUAUCG-CUCUCGUUGCGUCAUUGAGUCG
....((((((((((((((.......))...((((((((..((((..(((.........)))..)))))))))))-).......))).))))))))). ( -24.00)
>DroSec_CAF1 11088 95 + 1
ACCAGACUUAAUGUGUGUUACACUUA-AAUGCGAUAAACCAUUUCCACCAUCAUACUCGGUAUGAGUUUUAUCG-CGCUCGUUGCGUCAUUGAGUCG
....(((((((((.............-...((((((((..((((..(((.........)))..)))))))))))-)((.....))..))))))))). ( -24.60)
>DroSim_CAF1 9926 95 + 1
ACCAGACUUAAUGUGUGUUACACUUA-AAUGCGAUAAACCAUUUUCACCAUCAUACUCGGUAUGAGUUUUAUCG-CGCUCGUUGCGUCAUUGAGUCG
....(((((((((.............-...((((((((..((((..(((.........)))..)))))))))))-)((.....))..))))))))). ( -25.20)
>DroEre_CAF1 12798 96 + 1
AGCAGACAUAAUGAGUGUUACACUUA-AAUGCGAUAAACCAUUUUCGCCAUCAUACUCAGUGUGAGUUUUAUCGUUGCUCGUUGCGUCAUUGAGUUG
....(((.((((((((...((.....-...((((..........))))..((((((...))))))........)).)))))))).)))......... ( -20.90)
>DroYak_CAF1 11954 95 + 1
ACCAGACAUAAUGAGUGUUACACUUA-AAUGCGAUAAACCAUUUUCACCAUCAUACUGAGUGCGAGUUUAAUCG-CGCUCGUUGCGUCAUUGAGUCG
....(((.((((((.(((.((....(-((((........))))).............((((((((......)))-))))))).))))))))).))). ( -26.20)
>consensus
ACCAGACUUAAUGUGUGUUACACUUA_AAUGCGAUAAACCAUUUUCACCAUCAUACUCGGUAUGAGUUUUAUCG_CGCUCGUUGCGUCAUUGAGUCG
....(((((((((.(((...))).....(((((((...............((((((...))))))...............)))))))))))))))). (-18.03 = -18.23 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:48 2006