Locus 2719

Sequence ID 2R_DroMel_CAF1
Location 9,532,164 – 9,532,265
Length 101
Max. P 0.644227
window4510

overview

Window 0

Location 9,532,164 – 9,532,265
Length 101
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -32.35
Consensus MFE -24.73
Energy contribution -25.62
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -2.76
Structure conservation index 0.76
SVM decision value 0.23
SVM RNA-class probability 0.644227
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9532164 101 - 20766785
-GAUGUGGAUGUGGAUGCCAAAGUGCAUAAAGGAAGCCCAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAACUAUUCCCAUCGAAACGAGCUGGUCAUU
-((((.(((.((((((((......))))......(((((.((((((((((.....))))))))))..)))))..)))))))))))................. ( -37.20)
>DroSec_CAF1 9212 95 - 1
-GAU------GUGGAUGCCAAAGUGCAUAAAGGAAGCCCAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAAGUAUUCCCAUCGAAACGAGCUGGUCAUU
-(((------(.((((((......))).......(((((.((((((((((.....))))))))))..)))))......)))))))................. ( -33.30)
>DroSim_CAF1 7813 95 - 1
-GAU------GUGGAUGCCAAAGUGCAUAAAGGAAGCCCAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAACUAUUCCCAUCGAAACGAGCUGGUCAUU
-(((------(.((((((......)))...((..(((((.((((((((((.....))))))))))..)))))..))..)))))))................. ( -35.30)
>DroEre_CAF1 10738 95 - 1
-GAU------GUGGAUGCCAAAGUGCAUAAAGGAAGCCCAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAACUAUUCCCAUCGAAACGAGCUGGUCAUU
-(((------(.((((((......)))...((..(((((.((((((((((.....))))))))))..)))))..))..)))))))................. ( -35.30)
>DroYak_CAF1 9853 95 - 1
-GAU------GUGGAUGCCAAAGUGCAUAAAGGAAGCCGAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAACUAUUCCCAUCGAAACGAACUGGUCAUU
-(((------(.((((((......)))...((..((((..((((((((((.....))))))))))...))))..))..)))))))................. ( -32.10)
>DroAna_CAF1 6028 83 - 1
GGAU------ACCGAUGGCAAAGUGCAUAAAGGAAAGCCAGAAUGGCGACGAACUGGCGUCAUUCAAGGGUUAACUAUUUCCAUCAACA-------------
(((.------.((....((.....)).....))..((((.((((((((.(......)))))))))...)))).......))).......------------- ( -20.90)
>consensus
_GAU______GUGGAUGCCAAAGUGCAUAAAGGAAGCCCAGAAUGGCGCCUGACUGGCGUCAUUCAAGGGUUAACUAUUCCCAUCGAAACGAGCUGGUCAUU
..........((((((((......))))..((..(((((.((((((((((.....))))))))))..)))))..))....)))).................. (-24.73 = -25.62 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:47 2006