Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,528,932 – 9,529,025 |
Length | 93 |
Max. P | 0.574347 |
Location | 9,528,932 – 9,529,025 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.68 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -13.25 |
Energy contribution | -13.42 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.19 |
Mean z-score | -2.50 |
Structure conservation index | 0.46 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9528932 93 + 20766785 CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC-CGCUUGCAGCAAG-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCGCAAUCGCCAU ..((((((((((((....)))).((((..(((((.(-((((((...))))-.)-)))))))..))))..................))))))))... ( -32.40) >DroSec_CAF1 5991 87 + 1 CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC-CGCCUGCAGCCAG-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCGU ..((((((((.((((......(((((.....)))))-)))).)))))).)-)(-((((.....(((...........)))....))------))). ( -30.90) >DroEre_CAF1 7536 83 + 1 CUGCGGUUGCCGGUGAAAAGCGCUGCAAAUUGCGGC-CGCUUGUA----G-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCAC ..((((((((((((...(((((((((.....)))).-)))))...----)-))-).(((.....)))..........)))))..))------)... ( -31.10) >DroYak_CAF1 6641 84 + 1 CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGCCCGCUUGUA----G-CC-GGUGCAACAUGCAAAACAAGAAAGCAACAUCG------CCAG ..((((((((((((....)))).((((..(((((.((.((.....----)-).-)))))))..))))..........)))))..))------)... ( -26.50) >DroMoj_CAF1 130397 89 + 1 CUGCGGUUGGCAGUGAAAAUCAUUGCAAAUUACGGC-CAACAAUUGGAAGCCCGGCUGCAACAUGCAAAACAAGAAAGCAACAACA------ACAA .((((((((((((((.....)))))).......(((-...(....)...)))))))))))...(((...........)))......------.... ( -22.70) >DroPer_CAF1 24438 79 + 1 CGGCUGGUGGCAGUGAAAAUCGCUGCAAAUUGCGGC-CA-UUGUGGCCGG----GGUGCAACAUGCAAAACAAGAAAGCAACAGC----------- ..((((...((((((.....))))))...(((((((-(.-....))))(.----..(((.....)))...)......))))))))----------- ( -29.90) >consensus CUGCGGUUGCCGGUGAAAAUCGCUGCAAAUUGCGGC_CGCUUGUAGC_AG_CC_GGUGCAACAUGCAAAACAAGAAAGCAACAUCG______CCAU ((((((((..(((((.....)))))..)))))))).....................(((.....)))............................. (-13.25 = -13.42 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:43 2006