Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,520,891 – 9,521,006 |
Length | 115 |
Max. P | 0.533341 |
Location | 9,520,891 – 9,521,006 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -18.19 |
Energy contribution | -18.67 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.57 |
Structure conservation index | 0.76 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9520891 115 - 20766785 UUUUCCAGCUAAAUUCUGAUUCUA-----UAUCAUUUCGAAAAGAAGAUAACACAUUGUGAAUUGCAGGAUUUUAGUUCACACGCAGGGCGAAACCGCAAGCAUUCGCCAUGAUAUAUAA .....(((.......)))....((-----(((((((((.....)))).........(((((((((........))))))))).....((((((..(....)..)))))).)))))))... ( -24.90) >DroSec_CAF1 17527 113 - 1 UUUCCCAGCUAAAUUCUGAUUCUA-----UAUCAUUCCGAAAAGAAGAUAACACAUU--GAAUCGCAGGAUUUAAGUUCACACGCAGGGCGAAACCGCAAUCAUUCGCCAUGAUAUAUAA ......((((((((((((((((..-----((((.(((......))))))).......--)))))..))))))).))))......((.((((((..........)))))).))........ ( -19.50) >DroSim_CAF1 17908 113 - 1 UUUCCCAGCUAAAUUCUGAUUCUA-----UAUUAUUUCGAAAAGAAGAUAACACAUU--GAAUCACAGGAUUUAAGUUCACACGCAGAGCGAAACCGCAAGCAUUCGCACUGAUAUAUAA ......((((((((((((((((..-----..(((((((.....).))))))......--)))))..))))))).))))......(((.(((((..(....)..))))).)))........ ( -22.10) >DroEre_CAF1 17348 113 - 1 UUGCUCAGCUAAAUUCUGAUUCAA-----UAUCAUUUCGAAAAGAAGAUAACACAUU--GAAUUGCAGGAUUUCAGUUCACACGCAGGGCGAAACCGCAAGCAUUUGCCAUGAUAUAUAA ((((..((((((((((((((((((-----(......((........))......)))--))))..)))))))).)))).....))))((((((..(....)..))))))........... ( -24.50) >DroYak_CAF1 17301 118 - 1 UUUCUCAGCUAAAUUGUGAUUCUAUAGUAUAUCAUUUCGAAAAGAAGAUAACACAUU--GAAUCGCAGGAUUUUAGUUCACACGCAGGGCGAAACCGCAAGCAUUCGCCAUGAUGUAUAA ......((((((((((((((((.......((((..(((.....))))))).......--)))))))))...)))))))...(((((.((((((..(....)..)))))).)).))).... ( -29.24) >consensus UUUCCCAGCUAAAUUCUGAUUCUA_____UAUCAUUUCGAAAAGAAGAUAACACAUU__GAAUCGCAGGAUUUAAGUUCACACGCAGGGCGAAACCGCAAGCAUUCGCCAUGAUAUAUAA ......((((((((((((((((.......((((..(((.....))))))).........))))..)))))))).))))......((.((((((..(....)..)))))).))........ (-18.19 = -18.67 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006