Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,520,234 – 9,520,339 |
Length | 105 |
Max. P | 0.623634 |
Location | 9,520,234 – 9,520,339 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.92 |
Mean single sequence MFE | -17.75 |
Consensus MFE | -13.52 |
Energy contribution | -13.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.61 |
Structure conservation index | 0.76 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9520234 105 + 20766785 ---------------AAGUCGCACCAAUUUUUAGAGCGGUAGCUUUUUUCCUUUACACUGAUUUUGUCUCCUCUCAUCUCUCACUCUCAUUUUGGGUCCCUGCUCUGAACUACUCCAAAA ---------------..............((((((((((..((((..............((...((........))..)).............))))..))))))))))........... ( -15.63) >DroSec_CAF1 16881 114 + 1 CUAAAAAAGAUAUGAAUAUCCCACAAAUUUUUAGAGCGGU------UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUCACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA .......(((.((((.......(((((...((((((..(.------......)..)))))).)))))......)))).)))........(((((((((((......)))..)).)))))) ( -19.42) >DroSim_CAF1 17217 114 + 1 CUAAAAAAGAUAUGAAUAUCCCACCAAUUUUUAGAGCGGU------UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUUACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA ......((((.((((.........(((...((((((..(.------......)..))))))..))).......)))).)))).......(((((((((((......)))..)).)))))) ( -18.19) >consensus CUAAAAAAGAUAUGAAUAUCCCACCAAUUUUUAGAGCGGU______UUUUCUUUACUCUGAUUUUGUAUCCUCUCAUCUCUCACUCUCAUUUUGGGUCUCUGCUCUGAGUUACUCCAAAA .............................((((((((((....................((...((........))..))..((((.......))))..))))))))))........... (-13.52 = -13.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:26 2006