Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,518,376 – 9,518,482 |
Length | 106 |
Max. P | 0.921036 |
Location | 9,518,376 – 9,518,482 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.53 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -24.20 |
Energy contribution | -24.45 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -1.83 |
Structure conservation index | 0.91 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9518376 106 - 20766785 GCC--------------UUUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA ...--------------..........(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... ( -27.30) >DroSim_CAF1 15430 106 - 1 GCC--------------AUUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA ...--------------..........(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... ( -27.30) >DroEre_CAF1 15363 106 - 1 UCC--------------ACUCCCCAAAUCCUCUUUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCCAAGCGAUGAGCUGAAAACAAA ...--------------....................(((((((((((........))))).....(((((((((((.....)))).....)))))))...))))))............. ( -22.30) >DroYak_CAF1 15289 119 - 1 CCCCAACCCCCUUCAGCACU-CCCAAAUCCCCUUUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCUGAAAACAAA ...........((((((...-...(((......))).(((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))).))))))...... ( -29.30) >consensus GCC______________ACUCCCCAAAUCCCCUCUUAUAUUGCGCUUAAAUAUUUAUGAGCUACACGUGACGAUGGCUGAAAGCCAUGAAAUUGUCGCUAAGCGAUGAGCGGAAAACAAA ...........................(((.(((....((((((((((........))))).....(((((((((((.....)))).....)))))))...)))))))).)))....... (-24.20 = -24.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006