Locus 271

Sequence ID 2R_DroMel_CAF1
Location 1,665,795 – 1,665,894
Length 99
Max. P 0.947605
window575

overview

Window 5

Location 1,665,795 – 1,665,894
Length 99
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 88.61
Mean single sequence MFE -23.20
Consensus MFE -17.29
Energy contribution -16.60
Covariance contribution -0.69
Combinations/Pair 1.16
Mean z-score -2.88
Structure conservation index 0.75
SVM decision value 1.37
SVM RNA-class probability 0.947605
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1665795 99 - 20766785
CAAACCAACAAUAGUAUCUACAUUCUCACGGUCAAUAGAAAGAGCACGAAGUCUG----GCUUUAUCUUAGACCUCUGUAAUUCAAGAGUGGAUACAACUUAA
.............((((((((........((((...(((.(((((.((.....))----))))).)))..))))(((........)))))))))))....... ( -25.30)
>DroSec_CAF1 51625 99 - 1
CACACCAACAAUAGUAUCUAAAUUCUCACGGUCAAUAGAAAUAGCACGAAGUCCG----GCUUUAUCUUAGACCCCUGUAAUUCGAGAGUGGAUACAACUUAA
.............((((((..((((((..((((...(((...(((.((.....))----)))...)))..))))...(.....)))))))))))))....... ( -22.90)
>DroSim_CAF1 48898 99 - 1
CACACCAACAAUAGUAUCUAAAUUCUCACGGUCAAUAGAAAUAGCACGAAGUCUG----GCUUUAUCUUAGACCCCUGUAAUUCGAGAGUGGAUACAACUUAA
.............((((((..((((((..((((...(((...(((.((.....))----)))...)))..))))...(.....)))))))))))))....... ( -20.90)
>DroEre_CAF1 56012 103 - 1
AAAACCAACAAUAGUAUCCAAAUUCUCACGGUAAAUAGGAACAGCACGAAGUCCGCAUAGCUUUUCCUCUUACAAAUGUAAUUCGAGAGUGGAUACAACUUAA
.............(((((((...((((.........(((((.(((.((.....))....))).))))).((((....))))...)))).)))))))....... ( -23.70)
>consensus
CAAACCAACAAUAGUAUCUAAAUUCUCACGGUCAAUAGAAAUAGCACGAAGUCCG____GCUUUAUCUUAGACCCCUGUAAUUCGAGAGUGGAUACAACUUAA
.............((((((..((((((..((((...(((...(((.((.....))....)))...)))..))))...(.....)))))))))))))....... (-17.29 = -16.60 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:11 2006