Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,514,505 – 9,514,623 |
Length | 118 |
Max. P | 0.598796 |
Location | 9,514,505 – 9,514,623 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.68 |
Mean single sequence MFE | -33.44 |
Consensus MFE | -29.10 |
Energy contribution | -28.74 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.09 |
Mean z-score | -1.23 |
Structure conservation index | 0.87 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9514505 118 - 20766785 G--UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGAUAG .--.....(((.((((....))))(((((((((((....)))).))))))))))(((....((....))(((((..(....)..((((((..((....))..)))))))))))))).... ( -34.50) >DroSec_CAF1 11504 118 - 1 G--UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGACCA .--....(((.(.((((((.(..((((((((((((....)))).))))))))..)..))))))....(((((((..(....)..((((((..((....))..)))))))))))))).))) ( -35.70) >DroSim_CAF1 11550 120 - 1 GUGUGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUAUCUCGAUAA ......(.(((.((((....))))(((((((((((....)))).)))))))))))(..(..((....))..)..).(((((...((((((..((....))..))))))..)))))..... ( -35.60) >DroEre_CAF1 11792 117 - 1 ---UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACUGUAAGGGGUAGCAGAGAUCAAUGCACACAGAGAAAUCAAUGUGUUCUACAUUGAUAC ---((((((....(((....)))((((((((((((....))))))..((((.(((............))).))))...))))))..)))))).....(((((((((...))))))))).. ( -34.40) >DroYak_CAF1 11655 117 - 1 ---UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGUAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGUUCUUCAUGGAUAC ---((((((((.((((....))))(((((((((((....)))).)))))))))).......((....))................)))))..((....))...((((((.....)))))) ( -27.00) >consensus G__UGUGUGGCCAGGUUUUAGCCUUGAUUGAUUCGAAACCGAGUUUAGUUAGCCCGAGAAACCGUAAGGGGUAGCAGAGAUCAAUGCACAGAGAGAAAUCAAUGUGCACUACCUCGAUAA ......((((...(((....)))((((((((((((....))))))..((((.(((............))).))))...)))))).(((((..((....))..))))).))))........ (-29.10 = -28.74 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:14 2006