Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,512,441 – 9,512,561 |
Length | 120 |
Max. P | 0.981783 |
Location | 9,512,441 – 9,512,561 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.79 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -26.16 |
Energy contribution | -26.36 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.94 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9512441 120 - 20766785 ACAGUGAACUAAACUAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAAAAGCCAACUGCUUUGGUUUGAUUUCGACGGU ...(((...............))).((((..((..((((((....((((...((.((((......))))...)).........(((.....)))...))))))))))..))...)))).. ( -26.76) >DroSec_CAF1 9505 118 - 1 --AGUGAACUAAACUAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAACUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU --.(((...............))).((((..((..((((((....((((...((.((((......)))).......(((((....)))))..))...))))))))))..))...)))).. ( -26.96) >DroSim_CAF1 9538 118 - 1 --AGUGAAUUAAACCAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAGCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU --.(.(((((.....))))).)...((((..((..((((((....(((((..((.((((......)))).......(((((....)))))..))..)))))))))))..))...)))).. ( -31.50) >DroEre_CAF1 9721 117 - 1 --AGUGAAA-AAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCGGCGAGCCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU --.(((...-...........))).((((..((..((((((....((((......((.......))(((.((((.........))))....)))...))))))))))..))...)))).. ( -26.44) >DroYak_CAF1 9634 117 - 1 --AGUGAAA-AAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU --.(((...-...........))).((((..((..(((((.............((((((.....((((..((((.........))))..))))...)))))))))))..))...)))).. ( -27.35) >consensus __AGUGAAAUAAACAAAUUCCCACGCGUCAUAUUGAACCAACAAAAGCAUCAGGAGUAGAAAAAGCUGCGAACCAAGUUAACAGGUUAACAGCCAACUGCUUUGGUUUGAUUUCGACGGU ...(((...............))).((((..((..((((((....((((...((.((((......))))...)).........(((.....)))...))))))))))..))...)))).. (-26.16 = -26.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:06 2006