Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,511,858 – 9,511,975 |
Length | 117 |
Max. P | 0.888796 |
Location | 9,511,858 – 9,511,975 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.26 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -34.06 |
Energy contribution | -34.30 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.57 |
Structure conservation index | 0.86 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9511858 117 - 20766785 UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGAC---GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC ....(((((((((((((.(((....)))((....)).))))(((((((..(---(.((..((((........))))..)).))....((((((...)))))).))))))).))))))))) ( -39.00) >DroSec_CAF1 8916 111 - 1 UUCUUUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC---GAGCAAGUACAAAUACGAGUAC------GAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC .....((((((((.((((((((((((..((....))....)))....))))---).))))((((........))))------(((..((((((...)))))).....))).)))))))). ( -35.60) >DroSim_CAF1 8942 117 - 1 UUCUGUACAUGUUGUUGCCGCUGCCGCGACGCAAGUACGACGGAAAACGGC---GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC ...(((((.(((..((((((...(((((((....)).)).)))....))))---))))).)))))..((((....((((...(((..((((((...))))))..)))))))..))))... ( -39.80) >DroEre_CAF1 9148 117 - 1 UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC---GAGCAAGUACAAAUACGAGUACGAGUACGACUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC ....(((((((((.((((((((((((..((....))....)))....))))---).))))((((........))))(((...((((.((((((...)))))))))).))).))))))))) ( -40.10) >DroYak_CAF1 9057 120 - 1 UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGCGACGAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC ....((((((((((((((((...(((..((....))....)))....)))))))..((..((((........))))..)).((((..((((((...)))))).....))))))))))))) ( -42.60) >consensus UUCUGUUCAUGUUGUUGCCGCUGCCGCGACGCAAGUACAACGGAAAACGGC___GAGCAAGUACAAAUACGAGUACGAGUACGAGUACGAGAGUAUCUCUCGGGUUUUUCGGACGUGGAC ....(((((((((((((.(((....)))((....)).))))(((((((............((((........))))...........((((((...)))))).))))))).))))))))) (-34.06 = -34.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:05 2006