Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,664,636 – 1,664,744 |
Length | 108 |
Max. P | 0.524891 |
Location | 1,664,636 – 1,664,744 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -38.93 |
Consensus MFE | -38.33 |
Energy contribution | -38.14 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.98 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1664636 108 - 20766785 ACCUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG ........((((..((((((((((..(((((((....)))))))..)))))))(((((((((.((.............)).))))))))).........))).)))). ( -38.82) >DroSec_CAF1 50461 108 - 1 ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG .(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -39.80) >DroSim_CAF1 47741 108 - 1 ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG .(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -39.80) >DroEre_CAF1 54863 108 - 1 ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGUCGCUUUAAGCUGCGCGAAAGUUGAGCGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG .(((....(((((.((((((((((..(((((((....)))))))..)))))))....))).)).(..((((((((....))))))))..).........)))...))) ( -37.30) >consensus ACGUGAAUGCUGCCGCUGUGGCUACUGCAACGAGUUGUUGUUGCUCUGGCCGCUUUAAGCUGCGCGAAAGUUGAGUGAGCUCAGCUUGAGAGUCAAAAUAGCCUAGCG ........((((..((((((((((..(((((((....)))))))..)))))))(((((((((.((.............)).))))))))).........))).)))). (-38.33 = -38.14 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006