Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,195,660 – 1,195,750 |
Length | 90 |
Max. P | 0.564684 |
Location | 1,195,660 – 1,195,750 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -21.50 |
Energy contribution | -20.62 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.39 |
Structure conservation index | 0.88 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1195660 90 - 20766785 AUCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUAUCAUAGGAGCAGCAAGGCAGC-AAGUCUUAAUCU .((.((((((((((.(((...)))))))))))))((((....)))))).....(((.((....))..)))(((((...-..)))))..... ( -21.30) >DroSec_CAF1 12728 90 - 1 AGCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUGCCAUAGGAGCAACAAGGCAGC-AAGACUCAAUCU ....((((((((((.(((...)))))))))))))((((....))))((.....((((((.............))))))-.....))..... ( -25.52) >DroSim_CAF1 10508 90 - 1 AGCACAGUCUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUGCCAUAGGAGCAACAAGGCAGC-AAGACUCAAUCU ....((((((((((.(((...)))))))))))))((((....))))((.....((((((.............))))))-.....))..... ( -28.12) >DroEre_CAF1 13996 91 - 1 ACCACAGUUUUUGCAGAUGAGAUCGCAGAGAUUGGGGGAUCUCCCCAAAACAGGUUACCAUACGAGCAACAAGGCACCAAAGACUUAAUCU (((.((((((((((.(((...)))))))))))))((((....))))......)))..........((......))................ ( -22.90) >consensus AGCACAGUUUUUGCAGAUGAUAUCGCAGAGAUUGGGGGAUCUCCCUGAAACAGGUUACCAUAGGAGCAACAAGGCAGC_AAGACUCAAUCU ....((((((((((.(((...)))))))))))))((((....)))).....((((((........((......))..........)))))) (-21.50 = -20.62 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:51 2006