Locus 2697

Sequence ID	2R_DroMel_CAF1
Location	9,509,151 – 9,509,309
Length	158
Max. P	0.984480

overview

Window 6

Location	9,509,151 – 9,509,270
Length	119
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	99.16
Mean single sequence MFE	-23.50
Consensus MFE	-23.50
Energy contribution	-23.50
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.76
Structure conservation index	1.00
SVM decision value	1.98
SVM RNA-class probability	0.984480
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9509151 119 - 20766785
-GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
-(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. ( -23.50)
>DroSec_CAF1 6159 119 - 1
-GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
-(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. ( -23.50)
>DroSim_CAF1 6168 119 - 1
-GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
-(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. ( -23.50)
>DroEre_CAF1 6169 120 - 1
GGAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAACCGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
.(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. ( -23.50)
>DroYak_CAF1 6076 119 - 1
-GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAACCGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
-(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. ( -23.50)
>consensus
_GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAAACUAAAGACGAGGCAUACAUUACAUGUUAGACCACUCGAA
.(((((((((((((((((..........)))))))))..((......))...))))))))............................((((....((((...)))).......)))).. (-23.50 = -23.50 +   0.00)

alignment

secondary structure

dotplot

Window 7

Location	9,509,191 – 9,509,309
Length	118
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	97.14
Mean single sequence MFE	-26.98
Consensus MFE	-23.44
Energy contribution	-23.64
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-1.53
Structure conservation index	0.87
SVM decision value	0.59
SVM RNA-class probability	0.793480
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9509191 118 - 20766785
AUGGAUAUACGGCUCCAGAGGGAGAUAAAGAUACAGCUG--GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAA
.(((((((.(((((((....))))...........((((--(.......(((((((((..........))))))))))))))........)))))))).))................... ( -25.81)
>DroSec_CAF1 6199 118 - 1
GUGGAUAUACGACUCCAGAGGGAGAUAAAGAUACAGAUG--GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAA
.........((.((((....))))...............--(((((((((((((((((..........)))))))))..((......))...)))))))).....))............. ( -25.00)
>DroSim_CAF1 6208 118 - 1
AUGGAUAUACGACUCCAGAGGGAGAUAAAGAUACAGCUG--GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAA
.........((.((((....))))...............--(((((((((((((((((..........)))))))))..((......))...)))))))).....))............. ( -25.00)
>DroEre_CAF1 6209 120 - 1
AUGGAUAUACGGCUGCAGAGGGAGAUAAAGAUACAGCUGGGGAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAACCGAACAAGAA
.(((.....((((((..................))))))..(((((((((((((((((..........)))))))))..((......))...)))))))).........)))........ ( -27.97)
>DroYak_CAF1 6116 118 - 1
AUGGAUAUACGUCUCCAGAGGGAGAUAAAGAUACAGCUG--GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAACCGAACAAGAA
..(((.....((((((((..(............)..)))--)))))...(((((((((..........)))))))))............)))((((((.....)))..)))......... ( -31.10)
>consensus
AUGGAUAUACGACUCCAGAGGGAGAUAAAGAUACAGCUG__GAGACACUGCUGAAAAACACACACAACUUUUUCAGCCUAGCAACAACUUCCGGUGUCUCAAAGACGAAACGAACAAGAA
.........((.((((....)))).................(((((((((((((((((..........)))))))))..((......))...)))))))).....))............. (-23.44 = -23.64 +   0.20)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:46 2006