Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,507,110 – 9,507,230 |
Length | 120 |
Max. P | 0.500000 |
Location | 9,507,110 – 9,507,230 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -26.24 |
Energy contribution | -26.12 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.07 |
Structure conservation index | 0.94 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9507110 120 - 20766785 UUGUUCAAUUAGCAUGCACUCCUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGAUGAUAAAAACCGCGUCCGAC ...........(((((((((((..........))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.76) >DroSec_CAF1 4158 120 - 1 UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC ...........((((((((((((.........)))..)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.46) >DroSim_CAF1 4157 120 - 1 UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC ...........((((((((((((.........)))..)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -27.46) >DroEre_CAF1 4050 120 - 1 UUGUUCAAUUAGCAUGCACUUUUCAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGGCAUUAAAAACCGCGUCCGAC ...........(((((((((..((((....))))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... ( -28.26) >DroYak_CAF1 4145 120 - 1 UUGUUCAAUUAGCAUGCACUCUUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAAUUGUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGUUAAAAACCGCGUCCGAC ((((((((.((((............)))).)))).)))).(((.....)))((((((((....))))))))((((((...............))))))(((((........))))).... ( -28.56) >consensus UUGUUCAAUUAGCAUGCACUACUUAGUUAUUUGGUACAGUGUAUUUUUUACGAGAGUUCUCGACAAUUUUCGAGCGCUAAAACAAAGAAACCGCGCUCGACGAUAAAAACCGCGUCCGAC ...........(((((((((..((((....))))...)))))))((((((((((....)))).......((((((((...............))))))))...))))))..))....... (-26.24 = -26.12 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:35 2006