Locus 2691

Sequence ID 2R_DroMel_CAF1
Location 9,498,325 – 9,498,445
Length 120
Max. P 0.692906
window4431

overview

Window 1

Location 9,498,325 – 9,498,445
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -47.02
Consensus MFE -25.24
Energy contribution -25.35
Covariance contribution 0.11
Combinations/Pair 1.38
Mean z-score -1.74
Structure conservation index 0.54
SVM decision value 0.33
SVM RNA-class probability 0.692906
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9498325 120 - 20766785
GCUGCCAGUUCUCGCCCAAUGGUGAGCGCCUGGCCGCCGGAACAACCAAGGGCGAGGUGAGCAUCUUCGAUGUAAAGAAACGGAAGGCAGUAACAGUGGAGAUUCCGCCAAGCGACUGCA
((((((...((((((((...((((.((.....))))))((.....))..))))))))...(((((...)))))............))))))....((((.....))))...((....)). ( -43.90)
>DroVir_CAF1 13310 120 - 1
GCUGUCAGUUCUCGCCAAAUGGCGAGCGUCUGGCAGCGGGCACUACCAGCGGGGAGCUGAGCAUAUUUGAUGUGACGCGGCGCAAGGCACUGCAGGUAGAGGCGCCGCCCAGCGACUGCA
((((((((..((((((....))))))...))))))))((......)).((((...((((.((((.....))))...(((((((...((.(....)))....))))))).))))..)))). ( -58.60)
>DroPse_CAF1 9784 120 - 1
GCUGCCAGUUCUCUCCAAACGGGGAGCGUCUGGCCGCUGGAACAACCAAGGGCGAAGUGAGCGUCUUUGACAUAAAGAAGCGAACAGCGAUCUCUGUGGAGUCGCCGCCAAAUGAUUGCA
((.(((((..((((((....))))))...))))).))(((.....)))..((((..((..((.((((((...)))))).))..)).((((.(((....)))))))))))........... ( -45.50)
>DroGri_CAF1 11277 120 - 1
GCUGUCAGUUCUCACCGAACGGGGAGCGUCUGGCCGCUGGGACGACCAGCGGUGAAUUGAGCAUCUUUGAUGUGAAACGGCGACGGGCGCUCCAAGUGGAGGCGCCACCGUCUGAUUGCA
((.((((((((((........))))))((((.((((((((.....)))))))).).....(((((...))))).....)))((((((((((((....))).))))..))))))))).)). ( -53.00)
>DroAna_CAF1 10779 120 - 1
GCUGUCAGUUUUCCCCGAAUGGUGAUCGCUUGGCCGCCGGAACCACCAAAGGAGAGCUAAGCAUCUUUGACGUUAAGAAGAGAAAAGCGCUUCCCGUGGAGAUGCCGCCAAACGACUGCA
((.(((((((((((......((((..(....)..))))((.....))...))))))))..((((((((.(((....((((.(.....).)))).)))))))))))........))).)). ( -36.80)
>DroPer_CAF1 9761 120 - 1
GCUGCCAGUUUUCCCCAAAUGGGGAGCGUCUGGCCGCUGGAACAACCAAGGGCGAAGUGAGCGUCUUUGACAUAAAGAAGCGAACAGCGAUCUCUGUGGAGUCGCCACCAAAUGAUUGCA
...(((((..((((((....))))))...)))))((((........((((((((.......)))))))).........))))....((((((...((((.....)))).....)))))). ( -44.33)
>consensus
GCUGCCAGUUCUCCCCAAAUGGGGAGCGUCUGGCCGCUGGAACAACCAAGGGCGAAGUGAGCAUCUUUGACGUAAAGAAGCGAAAAGCGCUCCCAGUGGAGACGCCGCCAAACGACUGCA
((((((((..((((((....))))))...)))))((((((.....))...)))).....)))........................(((.((...((((.....)))).....)).))). (-25.24 = -25.35 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:31 2006