Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,664,304 – 1,664,407 |
Length | 103 |
Max. P | 0.926603 |
Location | 1,664,304 – 1,664,407 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 91.44 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -23.15 |
Energy contribution | -22.96 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.04 |
Structure conservation index | 0.86 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1664304 103 - 20766785 AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCAAUUCUGUAUGUGCUUAAA ..((((((((............((((((((....(((((......((........)).....))))).)))))))).((...------------))..))))))))......... ( -24.00) >DroSec_CAF1 50129 103 - 1 AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCUAUUCUGUAUGUGCUUAAA ..((((((((.((((((......(((((((....(((((......((........)).....))))).)))))))))).)))------------....))))))))......... ( -23.90) >DroSim_CAF1 47409 103 - 1 AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU------------GCUAUUCUGUAUGUGCUUAAA ..((((((((.((((((......(((((((....(((((......((........)).....))))).)))))))))).)))------------....))))))))......... ( -23.90) >DroEre_CAF1 54445 114 - 1 AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGUGCUAGAAAACGGAAGGCAACGGAA-AAGUGCAUUCGAGUUUGCUUUGAUAUCGCUUUUGCGAUUCUGUAUGUGCUGAAA ..((((((((..((((((..((((((((((..((((........))))...(((.(....-..)))).)))))))))).)))))).((((....))))))))))))......... ( -35.50) >consensus AAAUGCAGAAAAAUCGAAAAUAAACUCGGAGGCCGCGCUAGAAAACGGAAGGCAACGGAAAAAGUGCAUUCGAGUUCGCAUU____________GCUAUUCUGUAUGUGCUUAAA ..((((((((............((((((((....(((((......((........)).....))))).)))))))).((...............))..))))))))......... (-23.15 = -22.96 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:09 2006