Locus 2689

Sequence ID 2R_DroMel_CAF1
Location 9,495,065 – 9,495,160
Length 95
Max. P 0.635629
window4429

overview

Window 9

Location 9,495,065 – 9,495,160
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 74.30
Mean single sequence MFE -28.35
Consensus MFE -15.07
Energy contribution -16.18
Covariance contribution 1.12
Combinations/Pair 1.26
Mean z-score -1.62
Structure conservation index 0.53
SVM decision value 0.21
SVM RNA-class probability 0.635629
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9495065 95 - 20766785
AUCAAUGCC--GGUAUCAAACCGCCCGGCACCUACGCCAAUGGAAUGCCUCGCAAGCCGACGGUUCCGUGGGGUAAGCUAUAUA-CUAUGUAUAUA-----CU-
.....((((--((...........))))))..(((.(((.((((..((((((.....))).)))))))))).)))((.((((((-(...)))))))-----))- ( -28.00)
>DroSec_CAF1 7436 93 - 1
AUUAAUGGC--GGUAUCAAACCGUCCGGCACCUACGCCAAUGGAAUGCCUCGCAAGCCGACGGUUCCGUGGGGUAAGCUAUAUA-CUAU--AUAUA-----CU-
......(((--(((.....)))))).(((......))).((((..((((((((.((((...))))..))))))))..))))...-....--.....-----..- ( -28.90)
>DroSim_CAF1 7490 93 - 1
AUAAAUGGC--GGUAUCAAACCGCCUGGCACCUACGCCAAUGGAAUGCCUCGCAAGCCGACGGUUCCGUGGGGUAAGCUAUAUA-CUAU--AUAUA-----CU-
......(((--(((.....))))))((((......))))((((..((((((((.((((...))))..))))))))..))))...-....--.....-----..- ( -32.50)
>DroEre_CAF1 9026 96 - 1
GCCAAUGGC--GGUAUCAAGCCACCUGGCACCUACGCCAAUGGAAUGCUGCGCAAUCCGCCGGUUCCGUGGGGUAAGCAAUACA-UAUCAUAUACA-----CGG
((((.((((--........))))..))))...(((.(((.((((..((((.((.....))))))))))))).))).........-...........-----... ( -29.40)
>DroWil_CAF1 8268 95 - 1
GCAAAUGGAACCAUACCCAGCCCCCUGCCC--ACCUCGAAUGGAAUGCCCCGCAAGCCAGCAAUUCCAUGGGGUAAGUCCUAAAUCAA----ACUGCAGAA---
(((..(((........)))(((((......--.......(((((((((..(....)...)).))))))))))))..............----..)))....--- ( -22.01)
>DroYak_CAF1 8092 94 - 1
GCCAACGGC--GGUAUCAAGGCACCCGGCACCUACGCCAAUGGAAUGCCUCGCAAACCGCCGGUUCCGUGGGGUAAGCUAUACA-AUACAUAUAU-------GC
.....((((--(((..(.(((((((.(((......)))...))..))))).)...))))))).....(((..(((.....))).-.)))......-------.. ( -29.30)
>consensus
ACCAAUGGC__GGUAUCAAACCGCCCGGCACCUACGCCAAUGGAAUGCCUCGCAAGCCGACGGUUCCGUGGGGUAAGCUAUAUA_CUAU__AUAUA_____CU_
.....((((..(((..(.........)..)))...))))((((..((((((((.(((.....)))..))))))))..))))....................... (-15.07 = -16.18 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:28 2006