| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,489,072 – 9,489,185 |
| Length | 113 |
| Max. P | 0.748124 |
| Location | 9,489,072 – 9,489,185 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.30 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -0.76 |
| Energy contribution | -0.56 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.03 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9489072 113 - 20766785 -----UUCAGGUUUGACCUUGAGUGUUAUAAUGAAAAUAGUAUUUUACUGAAUAGGGGGAAUGG-GGAGCAGGUUAA-AACCUAUCUAUAUUUCCCCACAAAAAAAUAAACAUGUAAUCC -----.(((((......)))))(((((..........(((((...)))))....(((((((((.-(((..((((...-.)))).))).)))))))))...........)))))....... ( -27.90) >DroSim_CAF1 1492 113 - 1 -----UUCAGGUUUGACUUUGAGUGUUAUAAUCAAUAUAGUAGUUUACUGAAUAGGGGGGAUGGGGGAGCAGGUUAA-AACCUAUCUAUAUUUCCCCACAAA-AAAUAAACAUGUAAUCC -----(((((....((((....(((((......)))))...))))..)))))..((((..(((..(((..((((...-.)))).))).)))..)))).....-................. ( -27.70) >DroEre_CAF1 2668 103 - 1 -----UCCAGGUUUGUCUUUGAGUGUUAUAAUCAAAUAAU-AAUUUACUGAUUAGGG--------GGACCAGGAUAA-AU-CCAUCCAUAUUUGCCCCACAA-AAAUAAACAUGUAAUCC -----..((.((((((.((((.......((((((..(((.-...))).))))))(((--------(.(...((((..-..-..)))).....).)))).)))-).)))))).))...... ( -20.30) >DroYak_CAF1 1635 103 - 1 -----UCUGGGUUUGACUUUGAGUGUUAUAAGCAAAAUAG-UAUUUACUGAUUAGGG--------GGACCAGGGUAA-AC-CCAUCCAUAUUUCCCCCACAA-UAAUAAACAUGUAAUCC -----...(((((..((..((..((((((........(((-(....))))....(((--------(((...((((..-..-..)))).....))))))...)-)))))..)).))))))) ( -21.70) >DroAna_CAF1 1614 102 - 1 AUAUGUUUAGAUUUGUCUUUGGAUGUUUCAG-----AGAG-UAUGUA-UAAAUAUGCC---AGGGGAAUCAGCUUCAGAAAGGAUCAA--UUUCCCCA-AAA-AAAAAAACAUGUA---- ((((((((.......((((((((...)))))-----)))(-(((((.-...)))))).---.((((((...(.(((.....))).)..--.)))))).-...-....)))))))).---- ( -24.50) >consensus _____UUCAGGUUUGACUUUGAGUGUUAUAAUCAAAAUAG_AAUUUACUGAAUAGGG_____GG_GGACCAGGUUAA_AA_CCAUCCAUAUUUCCCCAAAAA_AAAUAAACAUGUAAUCC .....((((((......))))))...............................(((........(((...((........)).))).......)))....................... ( -0.76 = -0.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:24 2006