Locus 2685

Sequence ID 2R_DroMel_CAF1
Location 9,471,423 – 9,471,536
Length 113
Max. P 0.940358
window4421

overview

Window 1

Location 9,471,423 – 9,471,536
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.88
Mean single sequence MFE -33.20
Consensus MFE -17.80
Energy contribution -18.22
Covariance contribution 0.42
Combinations/Pair 1.05
Mean z-score -2.41
Structure conservation index 0.54
SVM decision value 1.31
SVM RNA-class probability 0.940358
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9471423 113 - 20766785
ACGU---GUGCGGAAUUGAA----CAAUACAAUUGGCUUAGAAAUCGACGGGCUUGAUGGUGAUGAACCGGGAGAGAAUGAAGGCCACCAGAAUGGUGGCGCACACGAAACAGAAGGCGA
.(((---((((..(((((..----.....)))))..............((..(((..((((.....))))...)))..))...((((((.....)))))))))))))............. ( -34.10)
>DroPse_CAF1 7050 117 - 1
ACGU---GUGCAGAAUUUCAAUUUCGGGACUAACAGUUCAGAAGUCGACUGGCUUGAUGGUGAUAAACCGCGAGAGAAUAAAAGCCACCAGUAUGGUGGCACAGACGAAGCAAAAGGCGA
.(((---.(((..........((((.((((.....)))).))))(((.(((.((((.((((.....)))))))).........((((((.....)))))).))).))).)))....))). ( -36.50)
>DroGri_CAF1 8275 99 - 1
--UG---GUUCAG------U----------UAAUGGUUUAGAAAUCGACGGGCUUGAUGGUGAUAAAGCGCGACAGGAUAAAUGCCACCAGAACGGUGGCGCAAACGAAACAAAAGGCGA
--..---(((..(------(----------(....(((((....((..((.((((..........)))).))...)).)))))((((((.....))))))...)))..)))......... ( -22.30)
>DroEre_CAF1 7522 113 - 1
ACGU---GUGCGGAAUUAGA----CAAGACAUUUUGCUCAGAAAUCGACGGGCUUGAUGGUGAUGAACCGGGAGAGAAUGAAUGCCACCAGAAUGGUGGCGCACACGAAACAGAAGGCGA
.(((---((((.........----.....((((((.(((....(((((.....)))))(((.....)))..)))))))))...((((((.....)))))))))))))............. ( -37.70)
>DroAna_CAF1 7288 115 - 1
ACGUGGUGUGCAGAAUUUGA----CAA-ACUUUUGGCUUAAAAGUCAACGGGCUUAAUGGUGAUAAAACGGGAGAGAAUAAAGGCCACCAGAAAGGUGGCGCACACGAAGCAAAAGGCAA
.....((((((.........----...-.((.((((((....)))))).)).(((..(.((......)).)..))).......((((((.....))))))))))))...((.....)).. ( -32.10)
>DroPer_CAF1 6988 117 - 1
ACGU---GUGCAGAAUUUCAAUUUCGGGACUAACAGUUCAGAAGUCGACUGGCUUGAUGGUGAUAAACCGCGAGAGAAUAAAAGCCACCAGUAUGGUGGCACAGACGAAGCAAAAGGCGA
.(((---.(((..........((((.((((.....)))).))))(((.(((.((((.((((.....)))))))).........((((((.....)))))).))).))).)))....))). ( -36.50)
>consensus
ACGU___GUGCAGAAUUUCA____CAAGACUAAUGGCUCAGAAAUCGACGGGCUUGAUGGUGAUAAACCGCGAGAGAAUAAAAGCCACCAGAAUGGUGGCGCACACGAAACAAAAGGCGA
...................................(((......(((.....(((..((((.....))))...))).......((((((.....)))))).....))).......))).. (-17.80 = -18.22 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:21 2006