Locus 2682

Sequence ID 2R_DroMel_CAF1
Location 9,466,721 – 9,466,832
Length 111
Max. P 0.685875
window4414

overview

Window 4

Location 9,466,721 – 9,466,832
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.79
Mean single sequence MFE -49.80
Consensus MFE -37.74
Energy contribution -38.05
Covariance contribution 0.31
Combinations/Pair 1.35
Mean z-score -1.38
Structure conservation index 0.76
SVM decision value 0.32
SVM RNA-class probability 0.685875
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9466721 111 + 20766785
GUUGCUGCU---GCACCGGCCACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGGCUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAAA------G
((.((((..---....)))).)).((.((.(((((((((.((.(.....)(((......((((....)))).((.((.....)).))..))))).))))))))).)).))...------. ( -51.50)
>DroVir_CAF1 4585 120 + 1
GCUGCAGCAGCUGCACCACCAACGGUGGCACCGCCGGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUUACCGAUGAACCGGGCGCUGGUGGUGCUGCAAGCGUGUGU
((((((((.((..((((......))))))(((((((((.((.....(((((....)))))(((((((...(((((.....))))).)).))))))))))))))))))))).)))...... ( -55.60)
>DroGri_CAF1 2972 114 + 1
GCAGCGGCUGCUGCACCACCCACAGUAGCACCGCCCGCAGCAACAUUCUGAGCACUUGGACUGGUCACGGCGGUGGGAUUUACCGAUGAACCGGGUGUUGGUGGUGCUGCAAG------U
(((((....)))))..........(((((((((((..(((.......)))(((((((((.(((....)))(((((.....))))).....))))))))))))))))))))...------. ( -48.30)
>DroWil_CAF1 24393 114 + 1
GCCGCAGCAGCUGCACCACCCACUGUGGCACCGCCGGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUAACAGAUGACCCAGGUGCUGAUGGUGCUGCAAA------U
...((((((.(.(((((..((.(((((((...((.....))..((.(((((....))))).))))))))).))((((.(((.....))))))))))))....).))))))...------. ( -48.20)
>DroMoj_CAF1 3298 114 + 1
GCCGCAGCCGCGGCACCACCAACCGUGGCACCCCCUGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUUACCGAAGAACCGGGCGCUGGCGGUGCUGCAAGA------
(((((....)))))..........(..(((((.((.((.((.....(((((....)))))(((((.....(((((.....)))))....))))))))).)).)))))..)....------ ( -48.10)
>DroPer_CAF1 2886 114 + 1
GCUGAUGAGGCCGUCGCACCCACAGUGGCACCCCCAGCUGCCACAUUCUGGGCACUUGGGCUGGUUACAGCGGUGGGAUUGACCGAAGAACCCGGCGCUGGUGGUGCUGCAAG------G
((.((((....)))))).......(..(((((.(((((((((........)))).....(((((......((((.......))))......)))))))))).)))))..)...------. ( -47.10)
>consensus
GCUGCAGCAGCUGCACCACCCACAGUGGCACCGCCAGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUUACCGAUGAACCGGGCGCUGGUGGUGCUGCAAG______U
((.((....)).))..........((((((((((((((.((.....(((((....)))))(((((.....((((.......))))....))))))))))))))))))))).......... (-37.74 = -38.05 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:14 2006