Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,661,957 – 1,662,056 |
Length | 99 |
Max. P | 0.624470 |
Location | 1,661,957 – 1,662,056 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -27.70 |
Energy contribution | -27.20 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.39 |
Structure conservation index | 0.97 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1661957 99 - 20766785 CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC ...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.80) >DroSec_CAF1 47496 99 - 1 CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC ...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.80) >DroSim_CAF1 44720 99 - 1 CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGCCGGCUCAAUAAGUUCUC ...............((((....((((((.((((((........))))))....)))))).....))))..(((((((....))))))).......... ( -27.30) >DroEre_CAF1 52139 97 - 1 CUCUGCUAAUUGAUAUGCACAUAAAUUCCAGCCGCUGUGUU--CGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCGUCAAAUUCUC ...............((((....((((((...((((((...--..))))))...)))))).....))))(((((((((....)))))))))........ ( -31.80) >consensus CUCUGUUAAUUGUUAUGCACAUAAAUUCCAGCUGCUAUGUUCUCGGCAGCGUUGGGAAUUGGAAAUGCAGAUGAGUUGUGGUCGGCUCAAUAAGUUCUC .........(((((.((((....((((((.((((((........))))))....)))))).....))))...((((((....)))))))))))...... (-27.70 = -27.20 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:08 2006