Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,443,721 – 9,443,857 |
Length | 136 |
Max. P | 0.864074 |
Location | 9,443,721 – 9,443,838 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 88.97 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -17.45 |
Energy contribution | -17.73 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9443721 117 - 20766785 GCCAGAAGGCAAUUCAA-AAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCCCCUCUUCAAAACACCUCCACCUCGCAACACCCCCCAAUUGCCCAAUGCCAAUGGCCAUGGUAAU ((((...(((((((...-..(((((...........)))))......-..(((........................)))..........)))))))....(((...)))..))))... ( -20.46) >DroSec_CAF1 30786 117 - 1 GCCAGAAGGCAAUUCAAAAAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCUCCUCUUCAAAAAACCUCCGCCUCGCAACACCC-CCAAGUGCCCAAUGCCAAUGGCCCUGGUAAU (((((..((((.........))))..........(((((((......-.((((...................))))..(((.(....-....))))....)))))))....)))))... ( -26.01) >DroSim_CAF1 39027 109 - 1 GCCAGAAGGCAAUUCAA-AAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCCCCUCUUCAAAAAACCUCCACCUCGCAACACCC-CCAAUU-------GAUAAUGGCCCUGGUAAU (((((..((((......-..))))......(((((((((........-..(((........................))).......-))))))-------))).......)))))... ( -22.19) >DroEre_CAF1 30846 110 - 1 GCCAGAAGGCAAUUCGA-AAUGCCAUAGCAAUCAGUUGGCAAUUAUAUUGGCGCCCCUCUUUAAA-AGCCUCCACCUCGCAACACCC-CCAA------AGUGCCAAUGGCCCUGGUAAU (((((..(((.......-..(((((..((.....)))))))....(((((((((...........-.((.........)).......-....------.)))))))))))))))))... ( -28.05) >DroYak_CAF1 30914 110 - 1 GCCAGAAGGCAAUUCAA-AGUGCCAUAACAAUCAGUUGGCAAUUAAAUUGGCGCCCCUCUUUAAA-AACCUCCACCUCGCUACACCC-CCAA------AGUGCCAAUGGCCCUGGUAAU (((((..(((.......-..(((((...........))))).....((((((((...........-.....................-....------.)))))))).))))))))... ( -25.39) >consensus GCCAGAAGGCAAUUCAA_AAUGCCAUAACAAUCAGUUGGCAAUUAAA_UGGCGCCCCUCUUCAAAAAACCUCCACCUCGCAACACCC_CCAA_U____AAUGCCAAUGGCCCUGGUAAU (((((..(((..........(((((..((.....))))))).......(((((...............................................)))))...))))))))... (-17.45 = -17.73 + 0.28)
Location | 9,443,761 – 9,443,857 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.57 |
Mean single sequence MFE | -19.65 |
Consensus MFE | -19.28 |
Energy contribution | -19.12 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.20 |
Structure conservation index | 0.98 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9443761 96 - 20766785 UGCCCCAACUCAAUGGCGUGCCAGAAGGCAAUUCAA-AAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCCCCUCUUCAAAACACCUCCACCUCG ..............((.(((((((((.....)))..-..(((((...........)))))......-)))))).))...................... ( -19.40) >DroSec_CAF1 30825 96 - 1 AGC-CCAACUCAAUGGCGUGCCAGAAGGCAAUUCAAAAAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCUCCUCUUCAAAAAACCUCCGCCUCG .((-(.........)))(((((((((.....))).....(((((...........)))))......-))))))......................... ( -19.90) >DroSim_CAF1 39059 95 - 1 AGC-CCAACUCAAUGGCGUGCCAGAAGGCAAUUCAA-AAUGCCAUAACAAUCAGUUGGCAAUUAAA-UGGCGCCCCUCUUCAAAAAACCUCCACCUCG .((-(.........)))(((((((((.....)))..-..(((((...........)))))......-))))))......................... ( -19.50) >DroEre_CAF1 30879 95 - 1 AGC-CCAACUCAAUGGCGUGCCAGAAGGCAAUUCGA-AAUGCCAUAGCAAUCAGUUGGCAAUUAUAUUGGCGCCCCUCUUUAAA-AGCCUCCACCUCG .((-(.(((((.(((((((....(((.....)))..-.))))))).).....))))))).........(((.............-.)))......... ( -20.04) >DroYak_CAF1 30947 95 - 1 AGC-CCAACUCAAUGGCGUGCCAGAAGGCAAUUCAA-AGUGCCAUAACAAUCAGUUGGCAAUUAAAUUGGCGCCCCUCUUUAAA-AACCUCCACCUCG .((-(.........)))(((((((..((((......-..)))).((((.....)))).........)))))))...........-............. ( -19.40) >consensus AGC_CCAACUCAAUGGCGUGCCAGAAGGCAAUUCAA_AAUGCCAUAACAAUCAGUUGGCAAUUAAA_UGGCGCCCCUCUUCAAAAAACCUCCACCUCG ..............((.(((((((((.....))).....(((((..((.....))))))).......)))))).))...................... (-19.28 = -19.12 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:04 2006