Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,429,375 – 9,429,473 |
Length | 98 |
Max. P | 0.545111 |
Location | 9,429,375 – 9,429,473 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.45 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -19.85 |
Energy contribution | -21.91 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.66 |
Structure conservation index | 0.63 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9429375 98 + 20766785 CUCUGUACAACUCGCUGUUCUAGUUAGUCGCCCGAACCUCGAACGGAACUUGUGGGGGUGUCUAGUGAC-------UAGUGAGGUGUAGGUGUCGCAUCUCGCAC ..........(((((((.((...((((.(((((...((.(((.......))).))))))).)))).)).-------)))))))(((.(((((...)))))))).. ( -29.80) >DroSec_CAF1 16734 95 + 1 CUCUGUA---CUCGCUGUUCUAGUUAAUCGCCCGAACCUCGAACGGAACUUGUGGGGGUGACUAGUGACUAGUGACUAGUGAGGUGUAGGUGUCG-------CAU .......---((((((((((((((((.((((((...((.(((.......))).))))))))....))))))).))).))))))(((.......))-------).. ( -30.00) >DroEre_CAF1 16900 84 + 1 CGCUGUGCACCUCGAUGUUCUAGUUAGUCGCCUAAACCUCGAACGUAACUUGUGGGGGUGG---GUGAC-------UAGUGAGGUGUAGGUGUC----------- ((((.(((((((((.........((((((((((..(((((..(((.....))).)))))))---)))))-------))))))))))))))))..----------- ( -35.30) >DroYak_CAF1 16876 80 + 1 CUCUUUGCACCUCGACGUUCUAGUUAGUCGCCUAAACCUCGAGCGGAACUUGUGGGG-------GUGAC-------UAGUGAGGUGUAGGUGUC----------- ...(((((((((((((......)))((((((((...((.((((.....)))).))))-------)))))-------)...))))))))))....----------- ( -31.40) >consensus CUCUGUACACCUCGAUGUUCUAGUUAGUCGCCCAAACCUCGAACGGAACUUGUGGGGGUG____GUGAC_______UAGUGAGGUGUAGGUGUC___________ .....((((((((((((.........(((((....(((((..(((.....))).))))).....))))).......))))))))))))................. (-19.85 = -21.91 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006