Locus 2671

Sequence ID 2R_DroMel_CAF1
Location 9,421,158 – 9,421,278
Length 120
Max. P 0.607469
window4394

overview

Window 4

Location 9,421,158 – 9,421,278
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.28
Mean single sequence MFE -45.32
Consensus MFE -37.40
Energy contribution -37.65
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -1.91
Structure conservation index 0.83
SVM decision value 0.15
SVM RNA-class probability 0.607469
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9421158 120 + 20766785
ACUCCUUCUCCACAAUGUGGAAGGCCGUCUCCAGGCGCUCCCGUGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGGUGCACCAACGCCGAGAAAGCCAAUC
........(((((...))))).(((..((((..((((..((((..((((((((...(((((....(....)....)))))..))))))))..))).)......))))))))..))).... ( -47.70)
>DroVir_CAF1 13247 120 + 1
AUUCCUUCUCCACAAUAUGGAAUGCCGACUCGAGGCGUUCGCGCGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGAUGCACCAACGCCGAGAAGGCCAAAC
...(((((((.........(((((((.......))))))).((((((((((((...(((((....(....)....)))))..)))))))))))).............)))))))...... ( -47.10)
>DroGri_CAF1 13953 120 + 1
ACUCCUUCUCGACAAUGUGGAAUGCCGUCUCGAGACGAUCCAACGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGAUGCACCAAUGCCGAGAAGGCCAAAC
...((((((((.((...(((..(((((((....))))(((...((((((((((...(((((....(....)....)))))..)))))))))).))))))))).)).))))))))...... ( -43.50)
>DroWil_CAF1 11111 120 + 1
ACUCCUUUUCCACAAUGUGGAACGCUGUCUCGAGGCGUUCGCGUGGUCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGAUUGCGAUGCACCAAAGCCGAGAAGGCCAAGC
.......((((((...)))))).(((.(((((.((.((...((..((((((((...(((((....(....)....)))))..))))))))..))..)).)).....))))).)))..... ( -42.00)
>DroMoj_CAF1 20707 120 + 1
AUUCUUUCUCCACAAUAUGGAAUGCCGUCUCGAGGCGUUCGCGCGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGAUGCACCAACGCCGAGAAGGCCAAUC
........((((.....))))..(((.((((..((((((((((((((((((((...(((((....(....)....)))))..)))))))))))).))....)))))))))).)))..... ( -46.20)
>DroAna_CAF1 10490 120 + 1
ACUCCUUCUCCACAAUGUGGAAGGCCGUCUCCAGGCGAUCGCGGGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGAUGCACCAGAGCCGAGAAGGCCAGUC
........(((((...))))).((((.((((..(((.((((((..((((((((...(((((....(....)....)))))..)))))))))))))).(....).))))))).)))).... ( -45.40)
>consensus
ACUCCUUCUCCACAAUGUGGAAUGCCGUCUCGAGGCGUUCGCGCGGCCGAUCGUUCCUUGCCUUUCGCCAGUCAAGCAAGUCCGGUCGGUUGCGAUGCACCAACGCCGAGAAGGCCAAUC
...(((((((.......(((...(((.......)))((...((((((((((((...(((((....(....)....)))))..))))))))))))..)).))).....)))))))...... (-37.40 = -37.65 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:55 2006