Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,405,357 – 9,405,517 |
Length | 160 |
Max. P | 0.872244 |
Location | 9,405,357 – 9,405,477 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -39.85 |
Consensus MFE | -26.62 |
Energy contribution | -25.88 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.34 |
Mean z-score | -2.19 |
Structure conservation index | 0.67 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9405357 120 + 20766785 AUUUGUGCUGCCUCGGUAGCGGUUUCCUUGUAAUCCGGCUCAGGAGUAGGAUCUUUUUUAAUAGAUUCAGGAAAUUCUGUAUUUUGAGCUGGAUCGGGAGUUGGUUCCUUUUGAACAGGC .((((((((((....)))))((..(((((.(.(((((((((((((...((((((........)))))).((.....))...))))))))))))).).)))..))..))......))))). ( -38.50) >DroSec_CAF1 17221 120 + 1 AUUUGUGCUGGCUCGGUAGUGUUCUCCUUGUAAUCCGGCUCAGGAGUUGGAUCUUUUUUAACAGAUUCAACGAAUUCUGCAUUUUGGGCUGGCUCGGGAGUUAGUUCCUUUUGAGCAGGC ......(((.(((((((((.((((((((.((......))..))))(((((((((........))))))))))))).)))).....(((((((((....)))))))))....))))).))) ( -39.90) >DroEre_CAF1 17204 120 + 1 AUCUGCGCUGGCUCUCUAGUGCUCUUCUUGGAAUCCGGCUCGGGAGUUAGAUCUUUUUUAACUGAUGCGGUGGAUUCUGCAUUUUGGGCUGGCUCGGGAGUUAGUUGCUCUUGAACGGGC .((((.((..((((...(((((.......((((((((.(.((..(((((((.....)))))))..)).).)))))))))))))..))))..))((((((((.....)))))))).)))). ( -46.51) >DroYak_CAF1 17205 120 + 1 AUCUGUGCUAGCUGUGUAGUGUUUUCCUUGUAUUCCGGCUUAGGAGUUAGAUCUUUCUUAACUGAUUCGGUGAAUUCUGCAUUUGGAGCUGGCUCGGGAGUUAGUUCCUUUUGAACGGGC .((((.(((((((((((((.((((.((......(((......)))((((((....)).))))......)).)))).))))))....))))))).)))).((..((((.....))))..)) ( -34.50) >consensus AUCUGUGCUGGCUCGGUAGUGUUCUCCUUGUAAUCCGGCUCAGGAGUUAGAUCUUUUUUAACAGAUUCAGUGAAUUCUGCAUUUUGAGCUGGCUCGGGAGUUAGUUCCUUUUGAACAGGC .....((((((....)))))).....(((((...(((((((((((((((((.....)))))).....(((......)))..))))))))))).(((((((.......)))))))))))). (-26.62 = -25.88 + -0.75)
Location | 9,405,397 – 9,405,517 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.19 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -29.21 |
Energy contribution | -28.90 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -1.82 |
Structure conservation index | 0.75 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9405397 120 + 20766785 CAGGAGUAGGAUCUUUUUUAAUAGAUUCAGGAAAUUCUGUAUUUUGAGCUGGAUCGGGAGUUGGUUCCUUUUGAACAGGCUUAGGAGAUGUCUCCGUUUCAGCUGGCCUGGAACUUGUGU ((.((((((((.((..(((....((((((((((((.....)))))...)))))))..)))..)).))))......((((((...((((((....))))))....))))))..)))).)). ( -34.80) >DroSec_CAF1 17261 120 + 1 CAGGAGUUGGAUCUUUUUUAACAGAUUCAACGAAUUCUGCAUUUUGGGCUGGCUCGGGAGUUAGUUCCUUUUGAGCAGGCUUGGGAGAUGUCUCCGUUUCAGCUGGCCUGGAACUUGUGU ((((.(((((((((........)))))))))..........(((..(((..(((.((((((..((((.....))))..)))).((((....))))...)))))..)))..)))))))... ( -43.50) >DroEre_CAF1 17244 120 + 1 CGGGAGUUAGAUCUUUUUUAACUGAUGCGGUGGAUUCUGCAUUUUGGGCUGGCUCGGGAGUUAGUUGCUCUUGAACGGGCUUGGGAGUUGUCUCCGUUUCAGCUGGCUUGGAACUUGUGU ((.((((....(((...(((.((((.((((.((((...((.(((..((((.(.((((((((.....)))))))).).))))..))))).)))))))).)))).)))...))))))).)). ( -41.20) >DroYak_CAF1 17245 120 + 1 UAGGAGUUAGAUCUUUCUUAACUGAUUCGGUGAAUUCUGCAUUUGGAGCUGGCUCGGGAGUUAGUUCCUUUUGAACGGGCUUGGGAGAUGCCUCCGUUUCAGCUGGCCUGGAACUUGUGU ..((((....((((..(....(((.(((((((.......)))).((((((((((....))))))))))....))))))....)..))))..))))(((((((.....)))))))...... ( -36.70) >consensus CAGGAGUUAGAUCUUUUUUAACAGAUUCAGUGAAUUCUGCAUUUUGAGCUGGCUCGGGAGUUAGUUCCUUUUGAACAGGCUUGGGAGAUGUCUCCGUUUCAGCUGGCCUGGAACUUGUGU (((((.(((((((..........)))))))....)))))......(((((.(.(((((((.......))))))).).))))).((((....))))(((((((.....)))))))...... (-29.21 = -28.90 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:47 2006