| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,404,565 – 9,404,665 |
| Length | 100 |
| Max. P | 0.968073 |
| Location | 9,404,565 – 9,404,665 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 72.41 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -3.04 |
| Energy contribution | -5.80 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.17 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9404565 100 - 20766785 AGCC-AAUAAGCACAUCUGAAACAACAACAGUGACUCUUACCACCAAGACAACAAUUGUUGAUGAAGGAAAACUACAUCCACCAAGUGAUAUUGAGCAAAU .(((-((((..(((........((.(((((((...((((......)))).....))))))).))..(((........))).....))).))))).)).... ( -20.30) >DroVir_CAF1 17114 91 - 1 CACCCACUGUAA-GCGUUCGCAC---CACAGAAACAGUAACCUC------AACAACUGUAACAUCAAAGCAACCGCAACAACCAGGGGCUCUAGAGGAACU ..(((.((((..-((....))..---.))))..(((((......------....))))).........((....))........))).............. ( -14.40) >DroSec_CAF1 16435 97 - 1 AGCC-AGUAAGCACAAGAGAAAC---AACAGUGACUGUUACCACCAAGACAACAAUUGUUGAUGAAGGAAAACUUCAUCAACCGAGUGAUCUUGAGCAAAU ....-.....((.(((((...((---(((((...)))))..................((((((((((.....))))))))))...))..))))).)).... ( -26.30) >DroEre_CAF1 16427 97 - 1 AACC-AAUUAGCACAACUGAAAC---AACAGAGACCAUUACCACCAAGACAACAAUUGUUGAUGAAGGAAAACCACAUCAACCGAGUGAUCUGGAGCAAAU ....-.....((....(((....---..)))............(((.((..((....(((((((..((....)).)))))))...))..))))).)).... ( -17.10) >DroYak_CAF1 16413 97 - 1 AACC-AUUUAGCACAUCUGAAAC---AACAGAGACUAUUACCACCAAGACAACCAUUGUUGAAGAAGAAAAACUACAUCAACCGAGCGAUCUUGAGCAAAU ....-.....((...((((....---..))))............(((((........(((((.(.((.....)).).))))).......))))).)).... ( -13.26) >consensus AACC_AAUAAGCACAACUGAAAC___AACAGAGACUAUUACCACCAAGACAACAAUUGUUGAUGAAGGAAAACUACAUCAACCGAGUGAUCUUGAGCAAAU ..........((.............................................(((((((.((.....)).)))))))((((....)))).)).... ( -3.04 = -5.80 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006