Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,399,098 – 9,399,191 |
Length | 93 |
Max. P | 0.649378 |
Location | 9,399,098 – 9,399,191 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -22.65 |
Consensus MFE | -17.17 |
Energy contribution | -18.05 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.11 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9399098 93 - 20766785 AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCCCGAAAUAUCCCACAAUUCACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUACAU ....(((((((((((((((.(((((((((((...)))).))))))))))))...))))........(((((.......))))).))))))... ( -25.60) >DroSec_CAF1 10973 93 - 1 AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCCGAGAAUACCCCACAAUUCACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUACAU ....(((((((((((((((.(((((...(((....)))...))))))))))...))))........(((((.......))))).))))))... ( -23.20) >DroEre_CAF1 10968 92 - 1 AAAGUGAUCUGGCUCAGUUAGUGGGAUUUUCCC-AGGAUACCCCACAAUUAACUAGUCUCUACUUAGCUCUUAGUUUUGGAGUAAGGUUAAAU ....((((((((((.((((((((((....((..-..))...)))))...)))))))))........(((((.......))))).))))))... ( -23.70) >DroYak_CAF1 10961 92 - 1 AAACUGGUCCGGCUGAGUUUGUGGGAUUUUCCC-AGAACACCCCAAAGUUACCUAGUCUUUAUUUAGCUCUUAGUAUUGGAGUAAGGUUAAAU ..(((((...((((..((((.((((.....)))-).)).)).....))))..)))))....(((((((.((((.(.....).))))))))))) ( -18.10) >consensus AAACUGAUCUGACUGAGUUAGUGGGAUUUUCCC_AGAAUACCCCACAAUUAACUAGUCUCUAUUUAGCUCUUAGUUUUGGAGUAAGGUUAAAU ....((((((((((.((((.(((((...(((....)))...)))))....))))))))........(((((.......))))).))))))... (-17.17 = -18.05 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:41 2006