| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,382,804 – 9,382,902 |
| Length | 98 |
| Max. P | 0.524091 |
| Location | 9,382,804 – 9,382,902 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 83.37 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -24.38 |
| Energy contribution | -24.13 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9382804 98 + 20766785 GGAGUCGGGAGUGCUGGCCGAAAGUGAGGAGCGCGACGGUCGUGACAUGGGAAUCGAGCGGACGGAGCGCUCGCGUACCUUUAC-------AGAAAAAUAAAUAA- ...((..((.((((..(((....)....((((((..((..(((...((....))...)))..))..))))))))))))))..))-------..............- ( -28.80) >DroPse_CAF1 4780 97 + 1 AGAGUCGGGAGUGCUGGCCGAAAGUGACGAGCGCGAUGGCCGCGACAUGGGAAUCGAGCGAACCGAUCGCUCGCGGACCUGUGU-------GGAA-GAGAGCUAA- ..........(((((.(((....).).).)))))..(((((.(.(((((((...(((((((.....)))))))....)))))))-------.)..-..).)))).- ( -35.40) >DroEre_CAF1 5025 97 + 1 GGAGUCGGGAGUGCUGGCCGAAAGGGAGGAGCGCGACGGCCGUGACAUGGGUAUGGAGCGGACGGAGCGCUCGCGUACCUUUGC--------GAA-AAUAAAUAAA ...((..((.((((...((....))...((((((..((.((((..(((....)))..)))).))..))))))..))))))..))--------...-.......... ( -38.30) >DroYak_CAF1 5026 97 + 1 GGAGUCGGGAGUGCUGGCCGAAAGUGAGGAGCGCGACGGCCGUGACAUGGGAAUGGAGCGAACGGAGCGCUCGCGUACCUUUGC--------GAA-AACAAAUAAA ((...((.((((((((((((...(((.....)))..)))))((..(((....)))..))......))))))).))..)).....--------...-.......... ( -33.80) >DroAna_CAF1 4786 104 + 1 AGAGUCCGGAGUGCUGGCCGAGAGCGACGAGCGCGAUGGUCUUGACAUGGGAAUAGAGCGUACCGAACGCUCGCGAACCUUUAUUAUUUUAAGAA-UAAAAAUAA- .(((.(((..(((((.(((....).).).)))))..))).))).....((.....((((((.....)))))).....))((((((........))-)))).....- ( -29.70) >DroPer_CAF1 6696 97 + 1 AGAGUCGGGAGUGCUGGCCGAAAGUGACGAGCGCGAUGGCCGCGACAUGGGAAUCGAGCGAACCGAUCGCUCGCGGACCUGUGU-------GGAA-GAGAGCUAA- ..........(((((.(((....).).).)))))..(((((.(.(((((((...(((((((.....)))))))....)))))))-------.)..-..).)))).- ( -35.40) >consensus AGAGUCGGGAGUGCUGGCCGAAAGUGACGAGCGCGACGGCCGUGACAUGGGAAUCGAGCGAACCGAGCGCUCGCGUACCUUUGC________GAA_AAGAAAUAA_ ......(((..(((.(((((...(((.....)))..)))))..............(((((.......))))))))..))).......................... (-24.38 = -24.13 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:31 2006