Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,371,882 – 9,371,978 |
Length | 96 |
Max. P | 0.678796 |
Location | 9,371,882 – 9,371,978 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.34 |
Mean single sequence MFE | -22.90 |
Consensus MFE | -7.79 |
Energy contribution | -9.35 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.30 |
Mean z-score | -1.89 |
Structure conservation index | 0.34 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9371882 96 + 20766785 UAGUUGUGAUGCACGUUUUGU-GGCGA----------AACAUUCCCGUUUCCAA-------------AUCCAAAUCCGGAAAUGUUUAAUAUACUUUUGGUUACUAACAUGCCUCCAAUA ..((((.((.(((.(((..((-(((((----------(((......)))))...-------------.(((......)))...................))))).))).))).)))))). ( -20.50) >DroSec_CAF1 41863 106 + 1 UAGUUGUAAUGCACGUUUUGU-GGCGAAGGCACACGAAACAUUUCCAUUUCCAA-------------AUCCAAAUCCGGAAAUGUUCAACAUAUUUGUGGUUACGAUCAUACAGCCAAUA ..((((((((.((((((((((-(((....)).)))))))).....(((((((..-------------..........)))))))............)))))))))))............. ( -29.70) >DroSim_CAF1 45178 106 + 1 UAGUUGUAAUGCACGCUUUGU-GGCGAAGGCACACAAAACAUUCCCAUUUCCAA-------------AUCCAAAUCCGGAAAUGUUCAUCAUAUUUGUGGUUACGAUCAUACAGCCAAUA ..((((((((.((((.(((((-(((....)).)))))).).....(((((((..-------------..........)))))))............)))))))))))............. ( -25.80) >DroEre_CAF1 42561 109 + 1 UG-UAGUGAUGCACAUUUUAU-UGCGGAAGCACAUAAAACAUUCCCAUUUACCAUUU---AAAAAGCAUUAAAGUCCGGAAAUAUUUAUCAUAUUUGUGGUUAUUUUUAAUUAG------ ..-...((((((...((((((-(((....))).))))))........((((.....)---)))..))))))....(((.((((((.....)))))).)))..............------ ( -18.20) >DroYak_CAF1 45347 114 + 1 UG---GUUGUUCACAUUUUAUCUUCCGCCAUAAAUGAAACUUUUCCAUUUUCCCUUUACUAAAAAGUAUCGACAUCCGGAAAUGUUUAACAUAUUUGUGGUUACGAUCAUAAAGCCA--- .(---((((....)).(((((..((.((((((((((((((.(((((..........((((....)))).........))))).))))....))))))))))...))..)))))))).--- ( -20.31) >consensus UAGUUGUAAUGCACGUUUUGU_GGCGAAGGCACACAAAACAUUCCCAUUUCCAA_____________AUCCAAAUCCGGAAAUGUUUAACAUAUUUGUGGUUACGAUCAUACAGCCAAUA .....(((((.(((((((((...((....))...)))))).....(((((((.........................)))))))............))))))))................ ( -7.79 = -9.35 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:29 2006